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The decisive role of the water structure in changes of conformation of nucleic acids

100%

Barciszewski J. , Jurczak J. , Porowski S. , Specht T. , Erdmann V. A.

nr 1

This review summarizes data on the structure and properties of water under normal conditions, at high salt concentration and under high pressure. We correlate the observed conformational transitions in nucleic acids with changes in water structure and activity, and suggest a mechanism of conformational transitions of nucleic acid involving these changes. We conclude that the Z-DNA form is induced only at low water activity caused by high salt concentrations and/or high pressure.

Nuclic acid content in tissue of the fish N. notopterus collected from different aquatic bodies

84%

Ravikiran K. , Kulkarni R. S.

tom 01

Nucleic acid content in brain, liver, kidney and gonads of the freshwater fish Notopterus notopterus collected from different aquatic bodies were studied during pre-spawning phase of the reproductive cycle. The three different aquatic bodies selected were Saradgi nala, Bennithora River and Bheema River and their physiochemical parameters also studied. The present study of nucleic acid content in brain, liver, kidney and gonads of the fish Notopterus notopterus collected from aquatic body Bennithora River shows normal levels of the nucleic acid as compared to that of fish from other two aquatic bodies. The normal content of nucleic acid content of N. notoptuers in the aquatic body Bennithora may be due to favorable environmental condition for survival, growth, distribution and reproductive activity.

Genetic diversity in tomato genotypes (Solanum lycopersicum) based on salinity responsive candidate gene using simple sequence repeats

67%

Ja'afar U. , Aliero A. A. , Shehu K. , Abubakar L.

International Letters of Natural Sciences

2018

tom 72

Salinity inhibition of plant growth is the result of osmotic and ionic effect and different plant species have developed different mechanisms to cope with those effects. With the discovery of molecular markers and marker assisted selection technology, it is possible to develop markers that identify salt tolerance. The genetic diversity of tomato genotypes were analyzed using SSRs polymorphic markers and Unweighted Pair Group Method with Arithmetic Mean. Leaves of the twenty tomato genotypes (landraces/accessions in Nigeria) were used to isolate their DNA using Bioland Plant Genomic DNA protocols. Primers were designed from 15 different salt responsive candidate genes, using Vector NTI and the sequence of the genes were obtained from ncbi genomic web site. All 15 primers sets generated shows clear distinct polymorphic profiles as evident from the 6% agarose gel profile. Dendrogram generated shows three groups, none of the panel intermixed in a subgroup. The genetic distance information reported in this study might be used by breeders when planning future crosses among tomato genotypes. From the result obtained UC82B recorded the highest vegetative and yield parameters, therefore, adoption of this genotype could be help to increase the tomato production in Sokoto agro-climatic area.

Zastosowania „click chemistry” w modyfikacjach nukleozydów i oligonukleotydów

67%

Gładysz M. , Milecki J.

Wiadomości Chemiczne

2014

tom [Z] 68, 7-8

617--643

Since the year 2001 new ideology of clean and simple synthesis in organic chemistry has been established. The outstanding scientists Meldal and Sharpless presented their concepts of Click Chemistry. Among the reactions chosen for this concept the reaction of Copper(I) Catalyzed Alkyne-Azide Cycloaddition (CuAAC) became the most popular one. It is the basis of syntheses employed for building blocks synthesis in medicinal chemistry and material science. Libraries of potentially pharmacologically active anticancer and antivirus compounds possessing neutral triazol linkage could be easily obtained. Remarkable efficiency of CuAAC reaction influenced on DNA- and RNAbased synthesis of novel oligonucleotides derivatives. Many of nucleic acid molecular modifications found applications in enzymatic transformation, nucleic acid hybridization, molecular tagging and gene silencing. The CuAAC reaction allows for introducing modifications into practically every region of nucleoside/nucleotide/ oligonucleotide. This includes versatile modifications of the base moiety both aiming at the base pairing ability or specific labeling of the nucleoside unit. Different conjugates (bio-, fluorescent-, affinity- or spin labels) are being attached to the base part of the nucleic acid taking advantage of the presence of azide or alkyne substituents, which can be installed without great difficulty. Labeling at the sugar part of the nucleoside can be realized at the position 2’, 3’ or 5’, the latter two giving rise to the end-labeled oligonucleotides and the 2’ position serving as the attachment point for labeling inside the oligonucleotide chain. These kind of nucleic acid modifications are very promising. Versatility of CuAAC reactions is demonstrated by numerous examples of introducing modifications into practically every reactive site of the nucleotide/oligonucleotide molecule. The review systematically presents application of the “click” technique for modification of nitrogenous base, sugar or pseudosugar moiety or phosphorus center. Possibility of creating new kind of chain linkage, devoid of negative charge and nuclease resistant is also shown. This allows to design a new class of nucleic acid analogues, similar in its DNA-mimicking properties to PNA’s.