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2016 | 72 | 01 |
Tytuł artykułu

LAMP - izotermiczna metoda amplifikacji DNA

Warianty tytułu
EN
LAMP - a method of isothermal DNA amplification
Języki publikacji
PL
Abstrakty
EN
Loop mediated isothermal amplification (LAMP) is an innovative technique of gene amplification and a simple diagnostic tool for the early detection and identification of diseases. The whole process of LAMP is easy and fast; amplification can be performed in less than one hour under isothermal conditions using a set of six specifically designed primers acting on eight different sequences of the target gene by incubation in a single tube. Products of amplification can be detected using agarose gel electrophoresis as well as monitoring without optical instruments or by a turbidimeter. The LAMP technique does not require a thermocycler and it can only be applied using a heating block or hot water bath. Given the benefits of rapid amplification, simplicity of the procedure and easy detection, as well as the lack of the need for specialized equipment or qualified staff, LAMP has potential application for clinical diagnosis and even in control of communicable diseases, contributing in this way to the development of personal medicine.
Wydawca
-
Rocznik
Tom
72
Numer
01
Opis fizyczny
s.22-27,rys.,tab.,bibliogr.
Twórcy
autor
  • Katedra Biologicznych Podstaw Produkcji Zwierzęcej, Wydział Biologii i Hodowli Zwierząt, Uniwersytet Przyrodniczy w Lublinie, ul. Akademicka 13, 20-950 Lublin
autor
  • Katedra Biologicznych Podstaw Produkcji Zwierzęcej, Wydział Biologii i Hodowli Zwierząt, Uniwersytet Przyrodniczy w Lublinie, ul. Akademicka 13, 20-950 Lublin
autor
  • Katedra Biologicznych Podstaw Produkcji Zwierzęcej, Wydział Biologii i Hodowli Zwierząt, Uniwersytet Przyrodniczy w Lublinie, ul. Akademicka 13, 20-950 Lublin
Bibliografia
  • Adams E. R., Schoone G. J., Ageed F., Sali S. E., Schallig H. D.: Development of a reverse transcriptase loop mediated isothermal amplification (LAMP) assay for the sensitive detection of Leishmania parasites in clinical samples. Am. J. Trop. Med. Hyg. 2010, 82, 591-596.
  • Adaszek Ł., Jankowska M., Kalinowski M., Banach T., Wułupek D., Winiarczyk S.: The loop-mediated isothermal amplification assay for rapid diagnosis of Babesia canis canis infections in dogs. Pol. J. Vet. Sci. 2013, 16, 131-133.
  • Angamuthu R., Baskaran S., Gopal D. R., Devarajan J., Kathaperumal K.: Rapid detection of the Marek’s disease viral genome in chicken feathers by loop-mediated isothermal amplification. J. Clin. Microbiol. 2012, 50, 961-965.
  • Boehme C. C., Nabeta P., Henostroza G., Raqib R., Rahim Z., Gerhardt M.: Operational feasibility of using loop-mediated isothermal amplification for diagnosis of pulmonary tuberculosis in microscopy centers of developing countries. J. Clin. Microbiol. 2007, 45, 1936-1940.
  • Chakraborty S., Choudhury S.: Recent trends in the diagnosis of Classical Swine Fever. Adv. Trop. Med. Pub. Health Int. 2012, 2, 61-71.
  • Cho H. S., Kang J. I., Park N. Y.: Detection of canine parvovirus in fecal samples using loop-mediated isothermal amplification. J. Vet. Diagn. Invest. 2006, 18, 81-84.
  • Cho H. S., Park N. Y.: Detection of canine distemper virus in blood samples by reverse transcription loop-mediated isothermal amplification. J. Vet. Med. B. Infect. Dis. Vet. 2005, 52, 410-413.
  • Das A., Babiuk S., McIntosh M. T.: Development of a loop-mediated isothermal amplification assay for rapid detection of capripoxviruses. J. Clin. Microbiol. 2012, 50, 1613-1620.
  • Dhama K., Karthik K., Chakraborty S., Tiwari R., Kapoor S., Kumar A., Thomas P.: Loop-mediated isothermal amplification of DNA (LAMP): a new diagnostic tool lights the world of diagnosis of animal and human pathogens: a review. Pak. J. Biol. Sci. 2014, 17, 151-166.
  • Dinh D. T., Le M. T. Q., Vuong C. D., Hasebe F., Morita K.: An updated loop-mediated isothermal amplification method for rapid diagnosis of H5N1 Avian Influenza Viruses. Trop. Med. Health. 2011, 39, 3-7.
  • Dukes J. P., King D. P., Alexandersen S.: Novel reverse transcription loop-mediated isothermal amplification for rapid detection of foot-and-mouth disease virus. Arch. Virol. 2006, 151, 1093-1106.
  • Endo S., Komori T., Ricci G., Sano A., Yokoyama K.: Detection of gp43 of Paracoccidioides brasiliensis by the loop-mediated isothermal amplification (LAMP) method. FEMS Microbiol. Lett. 2004, 234, 93-97.
  • Enosawa M., Kageyama S., Sawai K., Watanabe K., Notomi T.: Use of loop-mediated isothermal amplification of the IS900 sequence for rapid detection of cultured Mycobacterium avium subsp. Paratuberculosis. J. Clin. Microbiol. 2003, 141, 4359-4365.
  • Fukuda S., Takao S., Kuwayama M., Shimazu Y., Miyazaki K.: Rapid detection of norovirus from fecal specimens by real-time reverse transcription-loop-mediated isothermal amplification assay. J. Clin. Microbiol. 2006, 44, 1376-1381.
  • Francois P., Tangomo M., Hibbs J., Bonetti E. J., Boehme C. C., Notomi T., Schrenzel J.: Robustness of a loop-mediated isothermal amplification reaction for diagnostic applications. FEMS Immunol. Med. Mic. 2011, 62, 41-48.
  • Gao H., Lei Z., Jia J., Wang S., Chen Y., Sun M., Liang C.: Application of loop-mediated isothermal amplification for detection of Yersinia enterocolitica in pork meat. J. Microbiol. Met. 2009, 77, 198-201.
  • Geojith G., Dhanasekaran S., Chandran S. P., Kenneth J.: Efficacy of loop mediated isothermal amplification (LAMP) assay for the laboratory identification of Mycobacterium tuberculosis isolates in a resource limited setting. J. Microbiol. Met. 2011, 84, 71-73.
  • Goto M., Honda E., Ogura A., Nomoto A., Hanaki K. I.: Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue BioTech. 2009, 46, 167-172.
  • Hagiwara M., Sasaki H., Matsuo K., Honda M., Kawase M., Nakagawa H.: Loop-mediated isothermal amplification method for detection of human papillomavirus type 6, 11, 16 and 18. J. Med. Virol. 2007, 79, 605-615.
  • Han E. T., Watanabe R., Sattabongkot J., Khuntirat B., Sirichaisinthop J.: Detection of four Plasmodium species by genus-and species-specific loop-mediated isothermal amplification for clinical diagnosis. J. Clin. Microbiol. 2007, 45, 2521-2528.
  • Han X., Ding C., He L., Hu Q., Yu S.: Development of loop-mediated isothermal amplification (LAMP) targeting the GroEL gene for rapid detection of Riemerella anatipestifer. Avian Dis. 2011, 55, 379-383.
  • Huy N. T., Hang le T. T., Boamah D., Lan N. T., van Thanh P.: Development of a single-tube loop-mediated isothermal amplification assay for detection of four pathogens of bacterial meningitis. FEMS. Microbiol. Lett. 2012, 337, 25-30.
  • Ikadai H., Tanaka H., Shibahara N., Matsuu A., Uechi M.: Molecular evidence of infections with Babesia gibsoni parasites in Japan and evaluation of the diagnostic potential of a loop-mediated isothermal amplification method. J. Clin. Microbiol. 2004, 42, 2465-2469.
  • Imai M., Ninomiya A., Minekawa H.: Rapid diagnosis of H5N1 avian influenza virus infection by newly developed influenza H5 hemagglutinin gene-specific loop-mediated isothermal amplification method. Vaccine 2006, 24, 6679-6682.
  • Imai M., Ninomiya A., Minekawa H., Notomi T., Ishizaki T., Tashiro M., Odagiri T.: Development of H5-RT-LAMP (loop-mediated isothermal amplification) system for rapid diagnosis of H5 avian influenza virus infection. Vaccine 2006, 24, 6679-6682.
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  • Iwamoto T., Sonobe T., Hayashi K.: Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium and M. intracellulare in sputum samples. J. Clin. Microbiol. 2003, 41, 2616-2622.
  • Jędryczak M., Burzyński A., Brachaczek A., Langwiński W., Song P., Kaczmarek J.: Loop-mediated isothermal amplification as a good tool to study changing Leptosphaeria populations in oilseed rape plants and air samples. Acta Agrobot. 2013, 66, 93-100.
  • Kaneko H., Iida T., Aoki K.: Sensitive and rapid detection of herpes simplex virus and varicella-zoster virus DNA by loop-mediated isothermal amplification. J. Clin. Microbiol. 2005, 43, 3290-3296.
  • Kaneko H., Kawana T., Fukushima E., Suzutani T.: Tolerance of loop-mediated isothermal amplification to a culture medium and biological substances. J. Biochem. Biophys. Meth. 2007, 70, 499-501.
  • Karthik K., Rathore R., Thomas P., Arun T. R., Viswas K. N., Dhama K., Agarwal R. K.: New closed tube loop mediated isothermal amplification assay for prevention of product cross-contamination. MethodsX 2014, 1, 137-143.
  • Kirunda H., Thekisoe O. M. M., Kasaija P. D., Kerfua S. D., Nasinyama G. W., Opuda-Asibo J., Inoue N.: Use of reverse transcriptase loop-mediated isothermal amplification assay for field detection of Newcastle disease virus using less invasive samples. Vet. World. 2012, 5, 206-212.
  • Lee C. C., Lin Y. C., Tsang C. L., Chung Y. T.: A loop-mediated isothermal amplification (LAMP) assay for rapid detection of Anaplasma phagocytophilum infection in dogs. Turk. J. Vet. Anim. Sci. 2012, 36, 205-210.
  • Lim K. T., Teh C. S. J., Thong K. L.: Loop mediated isothermal amplification assay for the rapid detection of Staphylococcus aureus. Bio. Med. Res. Int. 2013.
  • Liu Z., Hou J., Bakheit M. A., Salih D. A., Luo J.: Development of loop-mediated isothermal amplification (LAMP) assay for rapid diagnosis of ovine theileriosis in China. Parasitol. Res. 2008, 103, 1407-1412.
  • Luo H., Zhu D., Xue C., Qin J., Chen F., Cao Y.: An improved reverse transcription loop-mediated isothermal amplification assay for sensitive and specific detection of Infectious Bronchitis virus. J. Anim. Vet. Adv. 2012, 11, 2398-2402.
  • Ma M., Liu Z., Sun M., Yang J., Guan G.: Development and evaluation of a loop-mediated isothermal amplification method for rapid detection of Anaplasma ovis. J. Clin. Microbiol. 2011, 49, 2143-2146.
  • Moody A.: Rapid diagnostic tests for malaria parasites. Clin. Microbiol. Rev. 2002, 15, 66-78.
  • Moslemi E., Shahhosseiny M. H., Javadi G., Praivar K., Sattari T. N., Amini H. K.: Loop mediated isothermal amplification (LAMP) for rapid detection of HBV in Iran. Afr. J. Microbiol. Res. 2009, 3, 439-445.
  • Nagamine K., Kuzuhara Y., Notomi T., Takino J., Hori T., Kanda H.: Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol. Cell Probes 2002, 16, 223-229.
  • Nagamine K., Kuzuhara Y., Notomi T., Takino J., Hori T., Kanda H.: Multi-Detection by Target Mixed Loop-Mediated Isothermal Amplification. Int. J. Biochem. 2014, 4, 243-252.
  • Njiru Z. K., Ouma J. O., Bateta R., Njeru S. E., Ndungu K., Gitonga P. K., Traub R.: Loop-mediated isothermal amplification test for Trypanosoma vivax based on satellite repeat DNA. Vet. Parasitol. 2011, 180, 358-362.
  • Nkouawa A. N., Sako Y., Li T., Chen X., Wandra T.: Evaluation of a loop-mediated isothermal amplification method using fecal specimens for differential detection of Taenia species from humans. J. Clin. Microbiol. 2010, 48, 3350-3352.
  • Notomi T., Kanda H., Taguch F., Minekaw H., Itamura S., Odagiri T., Tashiro M.: RT-LAMP method provides a simple, rapid and specific detection system for SARS-CoV RNA. Ger. Med. Sci. 2004, 3, 8-11.
  • Notomi T. H., Okayama H., Masubuchi T., Yonekawa T., Watanabe K., Nobuyuki A., Hase T.: Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000, 28, 63.
  • Pandey B. D., Poudel A., Yoda T., Tamaru A., Oda N.: Development of an in-house loop-mediated isothermal amplification (LAMP) assay for detection of Mycobacterium tuberculosis and evaluation in sputum samples of Nepalese patients. J. Med. Microbiol. 2008, 57, 439-443.
  • Parida M. M., Horioke K., Ishida H., Dash P. K., Saxena P.: Rapid detection and differentiation of Dengue virus serotypes by a real-time reverse transcription-loop-mediated isothermal amplification assay. J. Clin. Microbiol. 2005, 43, 2895-2903.
  • Parida M. M., Posadas G., Inoue S.: Real-Time reverse transcription loop mediated isothermal amplification for rapid detection of West Nile Virus. J. Clin. Microbiol. 2004, 42, 257-263.
  • Parida M. M., Sannarangaiah S., Dash P. K., Rao P. V. L., Morita K.: Loop mediated isothermal amplification (LAMP): a new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases. Rev. Med. Virol. 2008, 18, 407-421.
  • Parida M. M., Santhosh S. R., Dash P. K.: Rapid and real-time detection of chikungunya virus by reverse transcription loop mediated isothermal amplification assay. J. Clin. Microbiol. 2007, 45, 351-357.
  • Parida M. M., Santhosh S. R., Dash P. K., Tripathi N. K., Saxena P.: Development and evaluation of reverse transcription-loop-mediated isothermal amplification assay for rapid and real-time detection of Japanese encephalitis virus. J. Clin. Microbiol. 2006, 44, 4172-4178.
  • Pavan K. P., Agarwal R. K., Thomas P., Sailo B., Prasannavadhana A., Kumar A., Singh D. K.: Rapid Detection of Salmonella enterica Subspecies enterica serovar Typhimurium by Loop Mediated Isothermal Amplification (LAMP) Test From Field Chicken Meat Samples. Food Biotech. 2014, 28, 50-62.
  • Pham H. M., Nakajima C., Ohashi K., Onuma M.: Loop-mediated isothermal amplification for rapid detection of Newcastle disease virus. J. Clin. Microbiol. 2005, 43, 1646-1650.
  • Plutzer J., Karanis P.: Rapid identification of Giardia duodenalis by loop-mediated isothermal amplification (LAMP) from faecal and environmental samples and comparative findings by PCR and real-time PCR methods. Parasitol. Res. 2009, 104, 1527-1533.
  • Poole C. B., Tanner N. A., Zhang Y., Evans T. C., Carlow C. K. S.: Diagnosis of brugian filariasis by loop-mediated isothermal amplification. PLOS Negl. Trop. Dis. 2012, 6, 1371.
  • Poon L. L. M., Leung C. S. W., Chan K. H., Lee J. H. C., Yuen K. Y., Guan Y., Peiris J. S. M.: Detection of human influenza A viruses by loop-mediated isothermal amplification. J. Clin. Microbiol. 2005, 43, 427-430.
  • Poon L. L. M., Wong B. W. Y., Ma E. H. T., Chan K. H., Chow L. M. C.: Sensitive and inexpensive molecular test for Falciparum malaria: Detecting Plasmodium falciparum DNA directly from heat-treated blood by loop-mediated isothermal amplification. Clin. Chem. 2006, 52, 303-306.
  • Ptaszyńska A., Borsuk G., Mułenko W., Demetraki-Paleolog J.: Differentiation of Nosema apis and Nosema ceranae spores under Scanning Electron Microscopy (SEM). J. Apicult. Res. 2014, 53, 537-544.
  • Ptaszyńska A., Borsuk G., Woźniakowski G., Gnat S., Małek W.: Loop-mediated isothermal amplification (LAMP) assays for rapid detection and differentation of Nosema Apis and N. ceranae in honeybees. FEMS 2014, 357, 40-48.
  • Ptaszyńska A. A., Łętowski J., Gnat S., Małek W.: Application of COI sequences in studies of phylogenetic relationships among 40 Apionidae species. J. Insect Sci. 2012, 12, 16.
  • Rafati A., Gill P.: Microfluidic method for rapid turbidimetric detection of the DNA of Mycobacterium tuberculosis using loop-mediated isothermal amplification in capillary tubes. Microchimica Acta 2014, 1-8.
  • Savan R., Igarashi A., Matsuoka S., Sakai M.: Sensitive and rapid detection of edwardsiellosis in fish by a loop-mediated isothermal amplification method. App. Environ. Microbiol. 2004, 70, 621-624.
  • Soliman H., El-Matbouli M.: Reverse transcription loop-mediated isothermal amplification (RT-LAMP) for rapid detection of viral hemorrhagic septicaemia virus (VHS). Vet. Microbiol. 2006, 114, 205-213.
  • Song L., Li J., Hou S., Li X., Chen S.: Establishment of loop-mediated isothermal amplification (LAMP) for rapid detection of Brucella spp. and application to milk and blood samples. J. Microbiol. Met. 2012, 90, 292-297.
  • Song T., Toma C., Nakasone N., Iwanaga M.: Sensitive and rapid detection of Shigella and enteroinvasive Escherichia coli by a loop-mediated isothermal amplification method. FEMS Microbiol. Lett. 2005, 243, 259-263.
  • Sonthayanon P., Chierakul W., Wuthiekanun V., Thaipadungpanit J., Kalambaheti T.: Accuracy of loop-mediated isothermal amplification for diagnosis of human leptospirosis in Thailand. Am. J. Trop. Med. Hygiene 2011, 84, 614-620.
  • Strachecka A., Borsuk G., Olszewski K., Paleolog J., Gagos M., Chobotow J., Nawrocka A., Gryzinska M., Bajda M.: The effect of amphotericin b on the lifespan, body-surface protein concentrations, and DNA methylation levels of honey bees (Apis mellifera) J. Apicult. Sci. 2012, 56, 107-113.
  • Strachecka A., Paleolog J., Borsuk G., Olszewski K.: The influence of formic acid on the body surface proteolytic system at different developmental stages in Apis mellifera L. workers. J. Apicult. Res. 2012, 51, 252-262.
  • Suebsing R., Prombun P., Srisala J., Kiatpathomchai W.: Loop-mediated isothermal amplification combined with colorimetric nano-gold for detection of the microsporidian Enterocytozoon hepatopenaei in penaeid shrimp. J. Appl. Microbiol. 2013, 114, 1254-126.
  • Sugiyama H., Yoshikawa T., Ihira M.: Comparison of loop-mediated isothermal amplification, real-time PCR and virus isolation for the detection of herpes simplex virus in genital lesions. J. Med. Virol. 2005, 75, 583-587.
  • Tang M. J., Zhou S., Zhang X. Y., Pu J. H., Ge Q. L., Tang X. J., Gao Y. S.: Rapid and sensitive detection of Listeria monocytogenes by loop-mediated isothermal amplification. Curr. Microbiol. 2011, 63, 511-516.
  • Tao Z. Y., Zhou H. Y., Xia H., Xu S., Zhu H. W., Culleton R. L., Gao Q.: Adaptation of a visualized loop-mediated isothermal amplification technique for field detection of Plasmodium vivax infection. Parasit. Vectors 2011, 4, 115.
  • Tomita N., Mori Y., Kanda H., Notomi T.: Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nature Protocols 2008, 3, 877-882.
  • Uemura N., Makimura K., Onozaki M., Otsuka Y., Shibuya Y.: Development of a loop-mediated isothermal amplification method for diagnosing Pneumocystis pneumonia. J. Med. Microbiol. 2008, 57, 50-57.
  • Ushikubo H.: Principle of LAMP method – a simple and rapid gene amplification method. Uirusu 2004, 54, 107-112.
  • Venkatesan G., Bhanuprakash V., Balamurugan V., Singh R. K., Pandey A. B.: Development of Loop-Mediated Isothermal Amplification Assay for Specific and Rapid Detection of Camelpox Virus in Clinical Samples. J. Virol. Methods 2012, 183, 34-39.
  • Wakabayashi T., Yamashita R., Kakita T.: Rapid and sensitive diagnosis of adenoviral keratoconjunctivitis by loop-mediated isothermal amplification (LAMP) method. Curr. Eye. Res. 2004, 28, 445-450.
  • World Health Organization: The use of a commercial loop-mediated isothermal amplification assay (TB-lamp) for the detection of tuberculosis: expert group meeting report. Geneva: May 2013.
  • Woźniakowski G., Kozdruń W., Samorek-Salamonowicz E.: Loop-mediated isothermal amplification for the detection of goose circovirus. Virol. J. 2012, 9, 110.
  • Xia J. F., Yan X. F., Yu H., Qu D., Long J. E.: Simple and rapid detection of human enterovirus 71 by reverse-transcription and loop-mediated isothermal amplification: Cryopreservation affected the detection ability. Diagn. Microbiol. Infect. Dis. 2011, 71, 244-251.
  • Xie S., Yuan Y., Song Y., Zhuo Y., Li T., Chai Y., Yuan R.: Using the ubiquitous pH meter combined with a loop mediated isothermal amplification method for facile and sensitive detection of Nosema bombycis genomic DNA PTP1. Chem. Commun. 2014, 50, 15932-15935.
  • Xu Z., Li L., Chu J., Peters B. M., Harris M. L.: Development and application of loop-mediated isothermal amplification assays on rapid detection of various types of staphylococci strains. Food Res. Int. 2012, 47, 166-173.
  • Xue C., Zhang Y., Zhou Q., Xu C., Li X., Cao Y.: Rapid detection of infectious bursal disease virus by reverse transcription loop-mediated isothermal amplification assay. J. Vet. Diagn. Invest. 2009, 21, 841-843.
  • Yan W., Shen Z., Tang X., Xu L., Li Q., Yue Y., Fu X.: Detection of Nosema bombycis by FTA Cards and Loop-Mediated Isothermal Amplification (LAMP). Curr. Microbiol. 2014, 69, 532-540.
  • Yang J. L., Zhang S. H., Liu Z. H., Yang R., Huang Y., Wen M.: Development and evaluation of a loop-mediated isothermal amplification assay for the rapid detection of porcine cytomegalovirus under field conditions. Virol. J. 2012, 9, 1186.
  • Yeh H. Y., Shoemaker C. A., Klesius P. H.: Evaluation of a loop-mediated isothermal amplification method for rapid detection of channel catfish Ictalurus punctatus important bacterial pathogen Edwardsiella ictaluri. J. Microbiol. Methods 2005, 63, 36-44.
  • Zhou S., Han S., Shi J., Wu J., Yuan X.: Loop-mediated isothermal amplification for detection of porcine circovirus type 2. Virol. J. 2011, 8, 1186.
  • Ziros P. G., Kokkinos P. A., Papanotas K., Vantarakis A.: Loop-mediated isothermal amplification (LAMP) for the detection of salmonella spp. Isolated from different food types. J. Microb. Biotech. Food Sci. 2012, 2, 152-161.
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