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2009 | 31 | 4 |
Tytuł artykułu

Improvement of an RNA purification method for grapevine (Vitis vinifera L.) suitable for cDNA library construction

Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
A method is described, which consistently yields high quality total RNA from grapevine. Dissolving of crude RNA pellets in borate-containing buffer, instead of normally used water before a selective lithium chloride precipitation, was found to be a critical step, leading to a 2.5-fold increase of yield. The resulting RNA preparations were suitable for standard downstream applications and also for cDNA library construction. The method worked efficiently and reproducibly and could easily be scaled from milligram to gram quantities of plant material grown in hydroponic culture, sandy soil or Perlite. It was applied to different kinds of grapevine tissues (leaves, stem) and, after additional adaptation of the protocol, to roots.
Słowa kluczowe
Wydawca
-
Rocznik
Tom
31
Numer
4
Opis fizyczny
p.871-875,fig.,ref.
Twórcy
autor
  • Laboratorie de Physiologie Moleculaire de la Vigne, B.P.901, 2050 Hammam-Lif, Tunisia
  • RLP AgroScience GmbH, AlPlanta, Breitenweg 71, 67435 Neustadt an der Weinstrasse, Germany
  • Laboratorie de Physiologie Moleculaire de la Vigne, B.P.901, 2050 Hammam-Lif, Tunisia
autor
  • Laboratorie de Physiologie Moleculaire de la Vigne, B.P.901, 2050 Hammam-Lif, Tunisia
autor
  • RLP AgroScience GmbH, AlPlanta, Breitenweg 71, 67435 Neustadt an der Weinstrasse, Germany
Bibliografia
  • Bhalerao R, Keskitalo J, Sterky F, Erlandsson R, Björkbacka H, Birve SJ, Karlsson J, Gardeström P, Gustafsson P, Lundeberg J, Jansson S (2003) Gene expression in autumn leaves. Plant Physiol 131:430–442. doi:10.1104/pp.012732
  • Boss PK, Davies C (2001) Molecular biology of sugar and anthocyanin accumulation in grape berries. In: Roubelakis-Angelakis KA (ed) Molecular biology and biotechnology of the grapevine. Kluwer Academic Publishers, Netherlands, pp 1–33
  • Daldoul S, Höfer MU, Linhard C, Jallouli N, Mliki A, Reustle GM, Ghorbel A (2008) Expression analysis of salt stress responsive genes in grapevines. In: Abdelly C, Öztürk M, Ege Ashraf M, Grignon C (eds) Biosaline agriculture and high salinity tolerance. Birkhäuser Verlag AG, Switzerland, pp 297–303
  • Fleige S, Pfaffl W (2006) RNA integrity and the effect on the realtime qRT-PCR performance. Mol Aspects Med 27:126–139. doi: 10.1016/j.mam.2005.12.003
  • Gasic K, Hernandez A, Korban S (2004) RNA extraction from different apple tissues rich in polyphenols and polysaccharides for cDNA library construction. Plant Mol Biol Rep 22:437a–437g. doi:10.1007/BF02772687
  • Iandolino AB, Silva GF, Lim H, Choi H, Williams LE, Cook DR (2004) High-quality RNA; cDNA; and derived est libraries from grapevine (Vitis vinifera L.). Plant Mol Biol Rep 22:269–278. doi:10.1007/BF02773137
  • Jaillon O, Aury J-M, Noel B, Policriti A, Clepet C, Casagrande A, Nathalie Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyaire C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Federica Cattonaro F, Anthouard V, Vico V, Fabbro CD, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Giorgio Malacrida G, Durand E, Pesole G, Laucou V, Philippe Chatelet P, Didier Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon A-F, Weissenbach J, Quetier F, Wincker P (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449:463–467. doi:10.1038/nature06148
  • Manning K (1991) Isolation of nucleic acids from plants by differential solvant precipitation. Anal Biochem 195:45–50. doi: 10.1016/0003-2697(91)90292-2
  • Renault AS, Deloire A, Letinois I, Kraeva E, Tesniere C, Ageorges A, Redon C, Bierne J (2000) Beta-1,3-glucanase gene expression in grapevine leaves as a response to infection with Botrytis cinerea. Am J Enol Vitic 5:81–87
  • Tattersall EAR, Ergul A, AlKayal F, DeLuc L, Cushman JC, Cramer GR (2005) Comparison of methods for isolating high-quality RNA from leaves of grapevine. Am J Enol Vitic 56(4):400–406
  • Thomas P, Schiefelbein JW (2002) Improved method for purification of RNA from stem tissue of grapevine and its use in mRNA profiling. Am J Enol Vitic 53:231–234
  • Troggio M, Pezzulli S, Pindo M, Malacarne G, Fontana P, Moreira FM, Costantini L, Grando MS, Viola R, Velasco R (2008) Beyond the genome, opportunities for a modern viticulture: a research overview. Am J Enol Vitic 59(2):117–127
  • Winkel-Shirley B (2002) Biosynthesis of flavonoids and effects of stress. Curr Opin Plant Biol 5:218–223. doi:10.1016/S1369-5266(02)00256-X
  • Wong ML, Medrano JF (2005) Real-time PCR for mRNA quantification. Biotechniques 39:75–85. doi:10.2144/05391RV01
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Bibliografia
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