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2001 | 48 | 3 |
Tytuł artykułu

An introduction to DNA chips: principles, technology, applications and analysis

Autorzy
Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
This review describes the recently developed GeneChip technology that provides ef­ficient access to genetic information using miniaturised, high-density arrays of DNA or oligonucleotide probes. Such microarrays are powerful tools to study the molecular basis of interactions on a scale that would be impossible using conventional analysis. The recent development of the microarray technology has greatly accelerated the in­vestigation of gene regulation. Arrays are mostly used to identify which genes are turned on or off in a cell or tissue, and also to evaluate the extent of a gene's expres­sion under various conditions. Indeed, this technology has been successfully applied to investigate simultaneous expression of many thousands of genes and to the detec­tion of mutations or polymorphisms, as well as for their mapping and sequencing.
Wydawca
-
Rocznik
Tom
48
Numer
3
Opis fizyczny
p.615-622,fig.
Twórcy
autor
  • Royal Institute of Technology, S-10691 Stockholm, Sweden
autor
Bibliografia
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  • 2.Schena, M., Shalon, D., Davis, R.W. & Brown, P.O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467-470.
  • 3.Lockhart, D.J. et al. (1996) Expression monitoring by hybridisation to high-density oligonucleotide arrays. Nat. Biotechnol. 14, 1675-1680.
  • 4.Schena, M., Shalon, D., Heller, R., Chai, A., Brown, P.O. & Davis, R.O. (1996) Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes. Proc. Natl. Acad. Sci. U.S.A.. 93, 10614-10619.
  • 5.Lipshutz, R.J., Fodor, S.P.A., Gingeras, T.R. & Lockhart, D.J. (1999) High density synthetic oligonucleotide arrays. Nat. Genet. 21, 20-24.
  • 6.McGall, G.H. et al. (1997) The efficiency of light-directed synthesis of DNA arrays on glass substrates. J. Am. Chem. Soc. 119, 5081-5090.
  • 7.Wodicka, L., Dong, H., Mittmann, M., Ho, M.-H. & Lockhart, D.J. (1997) Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat. Biotechnol. 15, 1-15.
  • 8.Benson, D.A., Boguski, M.S., Lipman, D.J. & Ostell, J. (1997) GenBank. Nucleic Acids Res. 25, 1-6.
  • 9.Schuler, G.D. et al. (1996) A gene map of the human genome. Science 274, 540-546.
  • 10.Cheung, V.G., Morley, M., Aguilar, F., Massimi, A., Kucherlapati, R. & Childs, G. (1999) Making and reading microarrays. Nat. Genet. 21, 15-19.
  • 11.Gingeras, T.R., Kwoh, D.Y. & Davis, G.R. (1987) Hybridization properties of immobilized nucleic acids. Nucleic Acids Res. 15, 5373-5390.
  • 12.Fodor, S.P.A., Read, L.J., Pirrung, M.C., Stryer, L., Lu, A.M. & Solas, D. (1991) Light- directed, spatially addressable parallel chemical synthesis. Science 251, 767-773.
  • 13.McGall, G., Labadie, J., Brook, P., Wallraff, G., Nguyen, T. & Hinsberg, W. (1996) Ligh-directed synthesis of high-density oligonucleotide arrays using semiconductor photoresists. Proc. Natl. Acad. Sci. U.S.A. 91, 5022-5026.
  • 14.Shchepinov, M.S., Case-Green, S.C. & Southern, E.M. (1997) Steric factors influencing hybridisation of nucleic acids to nucleotide arrays. Nucleic Acids Res. 25, 1155-1161.
  • 15.Sosnowski, R.G., Tu, E., Butler, W.F., O'Connell, J.P. & Heller, M.J. (1997) Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control. Proc. Natl. Acad. Sci. U.S.A.. 94, 1119-1123.
  • 16.Heller, R.N. & Tu, E. (1993) Active programmable electronic devices for molecular biomolecules. US Pat. 5605662.
  • 17.McIntyre, P.E. (1996) Microfabrication technology for DNA sequencing. Trends Biotechnol. 14, 69-73.
  • 18.Hugh Fan, Z., Mangru, S., Granzow, R., Heaney, R., Ho, W., Dong, Q. & Kumar, R. (1999) Dynamic DNA hybridisation on a chip using paramagnetic beads. Anal. Chem. 71, 4851-4859.
  • 19.Wang, D.G. et al. (1998) Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 280, 1077-1082.
  • 20.Richmond, C.S., Glasner, J.D., Mau, R., Jin, H. & Blattner, F.R. (1999) Genome-wide expression profiling in Escherichia coli K-12. Nucleic Acids Res. 27, 3821-3835.
  • 21.Oh, M.K. & Liao, J.C. (2000) Gene expression profiling by DNA microarrays and metabolic fluxes in Escherichia coli. Biotechnol. Prog. 16, 278-286.
  • 22.Iyer, V., DeRisi, J., Eisen, M., Ross, D., Spellman, P., Hudson, J., Jr. et al. (1997) Use of DNA microarrays to monitor differential gene expression in yeast and humans. FASEB J. 11, 1126-1131.
  • 23.Duggan, D.J., Bittner, M., Chen, Y., Meltzer, P. & Trent, J.M. (1999) Expression profiling using cDNA microarrays. Nat. Genet. 21, 10-14.
  • 24.Southern, E.M. (1996) DNA chip: analysing sequence by hybridisation to oligonucleotides on a large scale. Trends Genet. 12, 110-115.
  • 25.Behr, M.A., Wilson, M.A., Gill, W.P., Salamon, H., Schoolnik, G.K., Rane, S. & Small, P.M. (1999) Comparative genomics of BCG vaccines by whole genome DNA microarray. Science 284, 1520-1523.
  • 26. Debouck, C. & Goodfellow, P. (1999) DNA microarrays in drug discovery and development. Nat. Genet. 21, 48-50.
Typ dokumentu
Bibliografia
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