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1995 | 42 | 1 |
Tytuł artykułu

Binding of Escherichia coli integration host factor [IHF] to the origin segment of p15A plasmid

Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
The integration host factor (IHF) is a sequence-specific, histone-like, multi-fun- ctional DNA-binding and -bending protein of Escherichia coli. Characterization and functional analysis of this protein has been carried out mainly in bacteriophage λ and other mobile genetic elements. In this paper we report data concerning the binding of IHF protein to the plasmid oripl5A region. IHF binds to the single site of the DNA fragment containing the oripl5A, as shown by the gel mobility shift assays and footprinting experiment. On the basis of the ihf consensus sequences published, we have been able to identify one sequence of putative ihf site into the oripl5A sequence with two mismatches in relation to the consensus sequence of Kur et al., 1989, Gene 81,1-15. One ihf binding site was also found in the oriColEl region sequence with three mismatches in relation to this consensus sequence.
Wydawca
-
Rocznik
Tom
42
Numer
1
Opis fizyczny
p.103-108,fig.
Twórcy
  • Technical University of Gdansk, G.Narutowicza 11-12, 80-952 Gdansk, Poland
autor
Bibliografia
  • 1. Miller, H.I. (1984) Primary structure of the him A gene of Escherichia coli: homology with DNA binding protein HU and association with the phenylalanyl IRNA synthetase operon. Cold Spring Harbor Symp. Quant. Biol. 49,691-698.
  • 2. Flamm, E.L. & Weisberg, R.A. (1985) Primary structureof the/rip gene of Escherichia coli and of its product, the ß subunit of integration host factor. J. Mol. Biol. 183,117-128.
  • 3. Miller, H.I., Mozola, M.A. & Friedman, D.I. (1980) int-h: an int Mutation of phage X. that enhances site-specific recombination. Cell 20, 721-729.
  • 4. Friedman, D.I. (1988) Integration host factor: a protein for all reasons. Cell 55, 545-554.
  • 5. Kur, J., I iasan, N. & Szybalski, W. (1989) Physi­cal and biological consequences of interactions between integration host factor (IHF) and coliphage lambda late pR' promoter and its mutants. Gene 81,1-15.
  • 6. Craig, N.L. & Nash, H.A. (1984) E. coli integration host factor binds to specific sites in DNA. Cell 39, 707-716.
  • 7. Gardner, J.F. & Nash, H.A. (1986) Role of Esche­richia coli IHF protein in lambda site-specific recombination: a mutational analysis of binding sites. J. Mol. Biol. 191,181-189.
  • 8. Kur, J., Hasan, N. & Szybalski, W. (1992) Integra­tion host factor (IHF) binds to many sites in the A+T-rich b2 region of phage A. DNA. Gene 211, 1-9.
  • 9. Goodrich, J.A. Schwartz, M.L. & McClure, W. (1990) Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Nucleic Acids Res. 18,4993-5000.
  • 10. Kur, J., Hasan, N. & Szybalski, W. (1990) Alterations in the pR" promoter of coliphage X modify both its activity and interaction with the integration host factor (IHF). Mol. Gen. Genet. 221,411-420.
  • 11. Gamas, P., Burger, A.C., Churchward, G., Caro, L., Galas, D. & Chandler, M. (1986) Replication of pSClOl: effects of mutations in the E. coli DNA binding protein IHF. Mol. Gen. Genet. 204, 85-89.
  • 12. Filutowicz, M. & Appelt, K. (1988) The inte­gration host factor of Escherichia coli binds to multiple sites at plasmid R6K y origin and is essential for replication. Nucleic Acids Res. 16, 3829-3843.
  • 13. Greenstein, D., Zinder, N.D. & Horiuchi, K. (1988) Integration host factor interacts with the DNA replication enhancer of the filamentous phage fl. Proc. Natl. Acad. Sci. U.S.A. 85, 6262-6266.
  • 14. Cozzarelli, N.R., Kelley, R.B. & Kornberg, A. (1968) A minute circular DNA from Escherichia coli 15. Proc. Natl. Acad. Sci. U.S.A. 60, 992-999.
  • 15. Chang, A.C.Y. & Cohen, S.N. (1978) Constru­ction and characterization of amplifiable multi­copy DNA cloning vehicles derived from pl5A cryptic mini-plasmid. J. Bacteriol. 134, 1141-1156.
  • 16. Selzer, G., Som, T., Itoh, T. & Tomizawa, J. (1983) The origin of replication of plasmid pl5A and comparative studies on the nucleotide sequ­ences around the origin of related plasmids. Cell 32,119-129.
  • 17. Tomizawa, J. & Itoh, T. (1981) Plasmid ColEl incompatibility determined by interaction of RNA1 with primer transcript. Proc. Natl. Acad. Sci. U.S.A. 78, 6096-6100.
  • 18. Nash, H.A., Robertson, C.A., Flamm, E., Wcis- berg, R.A. & Miller, H.I. (1987) Overproduction of Escherichia coli integration host factor, a pro­tein with nonidentical subunits. /. Bacteriol. 169, 4124-4127.
  • 19. Ma nia lis, T., Fritsch, E.F. & Sambrook, J. (1982) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
  • 20. Fried, M. & Crothers, D.M. (1981) Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis. Nucleic Acids Res. 9,6505-6525.
  • 21. Maxam, A.M. & Gilbert, W. (1980) Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 65,499-560.
  • 22. Tullius, T.D. & Dombroski, B.A. (1986) Hydro- xyl radical "footprinting": high-resolution information about DNA-protein contacts and application to X repressor and Cro protein. Proc. Natl. Acad. Sci. U.S.A. 83,5469-5473.
  • 23. Rose, R.E. (1988) The nucleotide sequence of pACYC184. Nucleic Acids Res. 16,1241.
  • 24. Watson, N. (1988) A new revision of the sequence of plasmid pBR322. Gene 70,399^03.
Typ dokumentu
Bibliografia
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Identyfikator YADDA
bwmeta1.element.agro-article-b8d2b0b4-be08-46d0-90c1-71f5fd7e89ec
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