Warianty tytułu
Języki publikacji
Abstrakty
Studies on the molecular mechanism of genetic recombination in RNA viruses have progressed at the time when experimental systems of efficient recombination crossovers were established. The system of brome mosaic virus (BMV) represents one of the most useful and most advanced tools for investigation of the molecular aspects of the mechanism of RNA-RNA recombination events. By using engineered BMV RNA components, the occurrence of both homologous and nonhomologous crosses were demonstrated among the segments of the BMV RNA genome. Studies show that the two types of crossovers require different RNA signal sequences and that both types depend upon the participation of BMV replicase proteins. Mutations in the two BMV-encoded replicase polypeptides (proteins 1a and 2a) reveal that their different regions participate in homologous and in nonhomologous crossovers. Based on all these data, it is most likely that homologous and nonhomologous recombinant crosses do occur via two different types of template switching events (copy-choice mechanism) where viral replicase complex changes RNA templates during viral RNA replication at distinct signal sequences. In this review we discuss various aspects of the mechanism of RNA recombination in BMV and we emphasize future projections of this research.
Wydawca
Czasopismo
Rocznik
Tom
Numer
Opis fizyczny
p.847-868,fig.
Twórcy
Bibliografia
- Ahlquist, P., Strauss, J.K. & Zimmern, D. (1985) Sindbis virus proteins nsPl and nsP2 contain homology to nonstructural proteins from several RNA plant viruses. J. Virol 53,536-542.
- Ahlquist, P., Dasgupta, R. & Kaesberg, P. (1984a) Nucleotide sequence of the brome mosaic virus genome and its implications for viral replication. J. Mol. Biol. 172, 369-383.
- Ahlquist, P., French, R., Janda, M. & Loesch- Fries, L.S. (1984b) Multicomponent RNA
- plant virus infection derived from cloned viral cDNA. Proc. Natl Acad. ScL U.S.A. 81. 706G-7070.
- Allison, R., Janda, M. & Ahlquist, P. (1989) Sequence of cowpea chlorotic mottle virus RNAs 2 and 3 and evidence of a recombination event during bromoviral evolution. Virology 172, 321-330.
- Allison, R., Janda, M. & Ahlquist, P. (1988) Infectious in vitro transcripts from cowpea chlorotic mottle virus cDNA clones and exchange of individua. RNA components with brome mosaic virus. J. Virol. 62, 3581-3588.
- Banner, L.R. & Lai, M.M.C. (1991) Random nature of coronavirus RNA recombination in the absence of selection pressure. Virology 185, 441-445.
- Bergmann, M.A., Garcia-Sastre, A. & Palese, P. (1992) Tranfection-mediated recombination of influenza A virus. J. Virol. 66, 7576-7580.
- Bouzoubaa, S., Niesbach-Klosgen, U., Jupin, I., Guiiley, H., Richards, K. & Jonard, G. (1991) Shortened forms of beet necrotic yellow vein virus RNA-3 and -4: Internal deletions and a subgenomic RNA. J. Gen. Virology 72, 259-266.
- Bujarski, J.J. & Kaesberg, P. (1986) Genetic recombination in a multipartite plant virus. Nature 321, 528-531.
- Bujarski, J.J. & Dzianott, A.M. (1991) Generation and analysis of nonhomologous RNA-RNA recombinants in brome mosaic virus: Sequence complementarities at crossover sites. J. Virol 65. 4153-4159.
- Bujarski, J.J., Nagy, P.D. & Flasinski, S. (1994) Molecular studies of genetic RNA-RNA recombination in brome mosaic virus. Adv. Vir. Res. 43, 275-302.
- Bujarski, J J. & Nagy, P.D. (1994) Genetic RNA- RNA recombination in positive-stranded RNA viruses of plants; in Homologous Recombination in Plants (Paszkowski, J., ed.) pp. 1-24, Kluwer Academic Publisher, Dordrecht, The Netherlands.
- Cascone, PJ., Carpenter, C.D., Li, X.H. & Simon, A.E. (1990) Recombination between satellite
- RNAs of turnip crinkle virus. EMBO J. 9. 1709-1715.
- Cascone, PJ., Haydar, T.F. & Simon, A.E. (1993) Sequences and structures required for recombination between virus-associated RNAs. Science 260, 801-805.
- Chamberlin, M.J. (1995) New models for the mechanism of transcription elongation and its regulation. Harvey Lect. 88, 1-21.
- Dawson, W.O., Lewandowski, D.J., Hilf, M.E., Bu- brick, P., Raffo, A.J., Shaw, J.J., Grantham, G.L. & Desjardins, P.R. (1989) A tobacco mosaic virus-hybrid expresses and loses an added gene. Virology 172, 285-292.
- DeJong, W. & Ahlquist, P. (1991) Bromovirus host specificity and systemic infection. Semin. Virol 2, 97-105.
- Dolja, V.V. & Carrington, J.C. (1992) Evolution of positive-strand RNA viruses. Semin. Virol 315-326
- Domingo, E., Holland, J., Biebricher, C. & Eigen, M. (1995) Quasi-species: The concept and the word; in Molecular Basis of Virus Evolution (Gibbs, A.J., Calisher, C.H. & Garcia-Arenal, F., eds.) pp. 181-191, Cambridge University Press, Cambridge.
- Dzianott, A.M. & Bujarski, J.J. (1989) Derivation of an infectious viral RNA by autolytic cleavage of in vitro transcribed viral cDNAs. Proc. Natl Acad. ScL U.S.A. 80. 4823-4827.
- Dzianott, A.M. & Bujarski, J J. (1991) The nucleotide sequence and genome organization of the RNA-1 segment in two bromoviruses: Broad bean mottle virus and cowpea chlorotic mottle virus. Virology 185, 553-562.
- Edwards, M.C., Petty, I.T.D. & Jackson, A.O. (1992) RNA recombination in the genome of barley stripe mosaic virus. Virology 189, 389-392.
- Eigen, M. (1996) On the nature of virus quasispe- cies. Trends Microbiol 4, 216-217.
- Eigen, M. & Biebricher, C.K. (1988) Sequence space and quasispecies distribution; in Van- ability of RNA Genomes (Domingo. E., Holland. J.J., Ahlquist, P., eds.) vol. 3, pp. 211- 245, CRC Press, Boca Raton.
- Emini, E.A., Leibowitz, J., Diamond, D.C., Bonin, J. & Wimmer, E. (1984) Recombinants of ma- honey and sabin strain poliovirus type 1: Analysis of in vitro phenotypic markers and evidence that resistance to guanidine maps in the nonstructural proteins. Virology 137, 74-85.
- Fields, B. (1996) Fields Virology. Third Edition. Raven Press.
- Figlerowicz, M., Nagy, P.D. & Bujarski, J.J. (1997) A mutation in the putative RNA polymerase gene inhibits nonhomologous, but not homologous, genetic recombination in an RNA virus. Proc. Natl Acad. Sci. U.S.A. 94, 2073-2078.
- Figlerowicz, M., Nagy, P.D., Tang, N., Kao, C.C. & Bujarski, J J. (1998) Mutations in the N- terminus of the brome mosaic virus polymerase affect genetic RNA-RNA recombination. J. Virol in press.
- Gibbs, M., Armrstrong, J., Weiller, G.F. & Gibbs, A.J. (1997) Virus evolution; the past, a window on the future? in Virus-Resistant Transgenic Plants: Potential Ecological Impact (Tepfer, M. & Balazs, E., eds.) pp. 1-17, Springer Verlag.
- Goldbach, R. (1986) Molecular evolution of plant RNA viruses. Ann. Rev. Phytopathol. 24,289- 310.
- Greene, A.M. & Allison, R.F. (1994) Recombination between viral RNA and transgenic plant transcripts. Science 263, 1423-1425.
- Hall, T.C., Miller, W.A. & Bujarski, J J. (1982) Enzymes involved in the replication of plant viral RNAs; in Advances in Plant Pathology (Ingram, D.S. & Williams, P.H., eds.) voL 1, pp. 179-208, Academic Press.
- Hodgman, T.C. & Zimmern, D. (1987) Evolution of RNA viruses; in RNA Genetics (Holland, J.J., Domingo, E. & Ahlquist. P.. eds.) CRC Press, Boca Raton.
- Hillman, B.I., Carrington, J.C. & Morris, TJ. (1987) A defective interfering RNA that contains a mosaic of a plant virus genome. Cell 51, 427-433.
- Hirst, G.K. (1962) Genetic recombination with Newcastle disease virus, polioviruses and influenza. Cold Spring Harbor Symp. Quant. Biol 27, 303-308.
- Holland, J., Spindler, K., Horodyski, F., Grabau, E., Nichol, S. & Van de Pol, S. (1982) Rapid evolution of RNA genomes. Science 215, 1577-1585.
- Holland, J.J., DeLaTorre, J.C. & Steinhauer, D.A. (1992) RNA virus populations as quasispecies; in Genetic Diversity of RNA Viruses (Holland, J.J., ed.) pp. 1-20, Springer Verlag.
- Hu, W. & Temin, H. (1990) Retroviral recombination and reverse transcription. Science 250, 1227-1233.
- Huisman, M.J., Cornelissen, B.J.C., Groenendijk, C.F.M., Bol, J.F. & van Vloten-Doting, L. (1989) Alfalfa mosaic virus temperature- sensitive mutants. V. The nucleotide sequence of TBS 7 RNA 3 shows limited nucleotide changes and evidence for heterologous recombination. Virology 171, 409-416.
- Jakab, G., Vaistij, F.E., Droz, E. & Malnoe, P. (1997) Transgenic plants expressing viral sequences create a favourable environment for recombination between viral sequences; in Virus-Resistant Transgenic Plants: Potential Ecological Impact (Tepfer, M. & Balazs, E., eds.) pp. 45-51, Springer Verlag.
- Janda, M., French, R. & Ahlquist, P. (1987) High efficiency T7 polymerase synthesis of infectious RNA from cloned brome mosaic virus cDNA and effects of 5' extensions of transcript infectivity. Virology 158, 259-262.
- Kao, C.C., Quadt, R., Hershberger, R.P. & Ahlquist, P. (1992) Brome mosaic virus RNA replication proteins la and 2a form a complex in vitro. J. Virol. 66, 6322-6329.
- Kao, C.C. & Ahlquist, P. (1992) Identification of the domains required for direct interaction of the hpli rase-like and polymerase-like RNA replication proteins of brome mosaic virus. J. Virol 66, 7293-7302.
- Khatchikian, D., Orlich, M. & Rott, R. (1989) Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the hae- magglutinin gene of an influenza virus. Nature 340,156-157.
- Keck, J.G., Stohlman, S.A., Soe, S., Makino, S.,Lai, M.M.C. (1987) Multiple recombination sites nt. the 5' end of murine coronaviruo RNA. Virology 156, 331-334.
- Keck, J.G., Matsushima, G.K., Makino, S., Flem- ming, J.O., Vannier, D.M., Stohlman. S.A. & Lai, MMC. (1988) In vivo RNA-RNA recombination of a Coronavirus in mouse brain. J. Vi roL 62, 1810-1813.
- King, A.M.Q., McCahon, D., Slade, W.R. & Newman, J.W.I. (1982) Recombination in RNA. CeU 29, 921-928.
- King, A.M.Q. (1988) Genetic recombination in positive strand RNA viruses; in RNA Genetics (Domingo, E., Holland, J.J. & Ahlquist, P., eds.) vol. 2, pp. 149-185, CRC Press, Boca Raton.
- Kirkegaard, K. & Baltimore, D. (1986) The mechanism of RNA recombination in poliovirus. Cell 47, 433-443.
- Kroner, P., Richards, D., Treynor, P. & Ahlquist, P. (1989) Defined mutations in a small region of the brome mosaic virus 2a gene cause diverse temperature-sensitive RNA replication phenotypes. J. Virol 63. 5302-5309.
- Lahser, F.C., Marsh, L.E. & Hall, T.C. (1993) Contributions of the brome mosaic virus RNA-3 3'- non translated region to replication and translation. J. Virol 67, 3295-3303.
- Lai, M.C.M. (19S2) RNA recombination in animal and plant viruses. Microbiol. Rev. 56,61-79.
- Lai, M.C.M., Baric, R.S., Makino, S., Keck, J.G., Egbert, J., Leibowitz, J.L. & Stohlman, S.A. (1985) Recombination between nonseg- mented RNA genomes of murine coronavi- ruses. J. Virol. 59, 449-456.
- Ledinko, N. (1953) Genetic recombination with poliovirus type 1. Studies of crosses between a normal horse serum-resistant mutants of the same strain. Virology 20, 107-119.
- Li, Y. & Ball, L.A. (1993) Nonhomologous RNA recombination during negative-strand synthesis of flock house virus RNA. J. Virol 67, 3854- 3860.
- Lommel, S. & Xiong, Z.J. (1991) Recombination in red clover mosaic virus. Cell Biochem. 15 A, 151-155.
- Mais, D.E., Varrelmann, M., DiFonzo, C. & Rac- cah, B. (1997) Risk assessment of transgenic plants expressing the coat protein gene of plum pox potyvirus (PPV); in Virus-Resistant Transgenic Plants: Potential Ecological Impact (Tepfer, M. & Balazs, E., eds.) pp. 85-93, Springer Verlag.
- Marsh, L.E., Dreher, T.W. & Hall. T.C. (1988) Mutational analysis of the core and modulator sequences of the BMV RNA3 subgenomic promoter. Nucleic Acids Res. 16, 981-995.
- Marsh, L.E., Huntley, C.H., Pogue, G.P., Connell, J.P. & Hall. T.C. (1991) Regulation of (♦):(-) strand asymmetry in replication of brome mosaic virus RNA. Virology 182, 76-83.
- Marsh, L.E.. Pogue, G.P. & Hall. T.C. (1989) Similarities among plant virus (+) and (-) RNA termini imply a common ancestry with promoters of eucaryotic tRNAs. Virology 172, 415-427.
- Marsh, L.E., Pogue, G.P., Connell, J.P. & Hall. T.C. (1991) Artificial defective interfering RNAs derived from brome mosaic virus. J. Gen. Virol 72, 1787-1792.
- Mayo. M.A. & Jolly, C.A. (1991) The 5' terminal sequence of potato leafroll virus RNA: Evidence for recombination between virus and host RNA. J. Gen. Virol. 72, 2591-2595.
- McCahon, D., King, A.M.Q., Roe. D.S., Slade. W.R. & Newman, J.W.I. (1985) Isolation and biochemical characterization of intertypic recombinants of fookand-mouth disease virus. Virus Res. 3. 87-100.
- Meyers, G., Tautz. N., Dubovi, E J. & Thiel. H.J. (1991) Viral cytopathogenicity correlated with integration of ubiquitin-coding sequences. Virology 180. 602-616.
- Miller, W.A., Bujarski, J.J., Dreher, T.W. & Hall, T.C. (1986) Minus strand initiation by brome mosaic virus replicase within the 3' tRNA-like structure of native and modified RNA templates. J. Mol Biol 187, 537-546.
- Monroe, S. & Schlesinger, S. (1983) RNAs from two independently isolated defective interfering particles of Sindbis virus contain a cellular tRNA sequence at their 5' ends. Proc. Natl. Acad. Sci. U.S.A. 80, 3279-3283.
- Morozov. S.Y.. Dolja. V.V. & Ataheknv, J.G. (1989) Probable reassortment of genomic elements among elongated RNA-containing plant viruses. 29, 52-62.
- Moya, A. & Garcia-Arenal, F. (1995) Population genetics of viruses: An introduction; in Molecular Bask of Virus Evolution (Gibbs, A.J., Calisher, C.H. & Garcia-Arenal, F., eds.) pp. 213-223, Cambridge University Press.
- Nagy, P.D. & Bujarski, ,J.J. (1992) Genetic recombination in brome mosaic virus: Effect of sequence and replication of RNA on accumulation of recombinants. J. Virol 66, 6824- 6828.
- Nagy, P.D. & Bujarski, J.J. (1993) Targeting the site of RNA-RNA recombination in brome mosaic virus with antisense sequences. Proc. Natl Acad. Sci. U.S.A. 90, 6390-6394.
- Nagy. P.D. & Bujarski, J.J. (1995) Efficient system of homologous RNA recombination in brome mosaic virus: Sequence and structure requirements and accuracy of crossovers. J. Virol 69, 131-140.
- Nagy, P.D., Dzianott, A., Ahlquist, P. & Bujarski, J.J. (1995) Mutations in the helicase-like domain of protein la alter the sites of RNA-RNA recombination in brome mosaic virus. J. Virol 69, 2547-2556.
- Nagy, P.D. & Bujarski, J.J. (1996) Homologous RNA recombination in brome mosaic virus AU-rich sequences decrease the accuracy of crossovers. J. Virol 70, 415-426.
- Nagy, P.D. & Bujarski, J.J. (1997) Engineering of homologous recombination hot-spots with AU- rich sequences in brome mosaic virus. J. Virol. 71, 1294-1306.
- Nagy, P.D. & Bujarski, J.J. (1998) Silencing homologous RNA recombination hot spots with GC-rich sequences in brome mosaic virus. J. Virol 72, 1122-1130.
- Nagy, P.D., Ogiela, C. & Bujarski, J J. (1998) Mapping sequences active in homologous RNA recombination in brome mosaic virus: Prediction of recombination hot-spots. Virology, in press.
- Nagy, P.D. & Simon, A.E. (1997) New insights into the mechanisms of RNA recombination. Virology 235, 1-9.
- Onodera, S., Qiao, X., Gottlieb, P., Strassman, J., Frilander, M. &Mindich, L. (1993) RNA structure and heterologous recombination in the double-stranded RNA bacteriophage F6. J. Virol 67, 4914-4922.
- Palasingam, K. & Shaklee, P.N. (1992) Reversion of Qb RNA phage mutants by homologous RNA recombination. J. Virol 66, 2435-2442.
- Pathak, V.K. & Hu, W.-S. (1997) "Might as well jump!" Template switching by retroviral reverse transcriptase, defective genome formation, and recombination. Semin. Virol 8, 141-150.
- Pilipenko, E.V., Gmyl, A.P. & Agol, VI. (1995) A model for rearrangements in RNA genomes. Nucleic Acids Res. 23, 1870-1875
- Pogany, J., Huang, Q., Romero, J., Nagy, P.D. & Bujarski, J.J. (1994) Infectious transcripts from PCR-amplified broad bean mottle bro- movirus cDNA clones and variable nature of leader regions in RNA3 segment. J. Gen. Virol., in press.
- Pogue, G.P. & Hall, T.C. (1992) The requirement for a 5' stem-loop structure in brome mosaic virus replication support a new model for viral positive-strand RNA initiation. J. Virol 66, 674-684.
- Quadt, R. & Jaspars, E.M. (1990) Purification and characterization of brome mosaic virus RNA- dependent RNA polymerase. Virology 178, 189-194.
- Quadt, R., Kao, C.C:, Browning, K.S., Hersberger, R.P. & Ahlquist. P. (1993) Characterization of a host protein associated with brome mosaic virus RNA-dependent RNA polymerase. Proc Natl Acad Sci. U.S.A. 90, 1498-1502.
- Quadt, R., Ishikawa, M., Janda, M. & Ahlquist. P.A. (1995) Formation of brome mosaic virus RNA-dependent RNA polymerase in yeast requires coexpression of viral proteins and viral RNA. Proc. Natl. Acad. Sci. U.S.A. 92, 4892- 4896.
- Rao, A.L.N. & Hall, T.C. (1993) Recombination and polymerase error facilitate restoration of infectivity in bromc mosaic virus. J. Virol. 67, 969-979.
- Robinson, D.J., Hamilton, W.D.O., Harrison, B.D. & Baulcombe, D.C. (1987) Two anomalous to- bravirus isolates: Evidence for RNA recombination in nature. J. Gen. Virol. 68, 2551-2561
- Romanova, L.I., Blinov, V.M., Tolskaya, E.A., Vik- torova, E.G., Kolesnikowa, M.S., Guseva, E.A. & Agol, VI. (1986) The primary structure of crossover regions of intertypic poliovirus recombinants: A model of recombination between RNA genomes. Virology 155,202-213.
- Romanova, L.I., Viktorova, E.G., Tolskaya, E.A., Kolesnikova, M.S., Guseva, E.A. & Agol, VI. (1985) Primary structure of the crossover region in the genome of two intertypic poliovirus recombinants. Bioorg. Khim, 11, 1685- 1687 (in Russian).
- Roossinck, M. (1997) Mechanisms of plant virus evolution. Annu. Rev. PhytopathoL 35, 191- 209.
- Rott, M.E., Tremaine, J.H. & Rochon, D.M. (1991) Comparison of the 5' and 3' termini of tomato ringspot vims RNA1 and RNA2: Evidence for RNA recombination. Virology 185,468-472.
- Saunders, K., King, A.M.Q., McCahon, D., Newman, J.W.I., Slade, W.R. & Forss, S. (1985) Recombination and oligonucleotide analysis of guanidine-resistant foot-and-mouth disease mutants. J. Virology 56, 921-929.
- Shirako, Y. & Brakke, M.K. (1984) Spontaneous deletion mutation of soil-borne wheat mosaic virus, II. J. Gen. ViroL 65, 855-858.
- Simon, A.E. & Bujarski, J.J. (1994) RNA-RNA recombination and evolution in virus-infected plants. Annu. Rev. PhytopathoL 32, 337-362.
- Smith, D.B. & Inglis, S.C. (1987) The mutation rate and variability of eukaryotie viruses: An analytical review. J. Gen. ViroL 68, 2729- 2740.
- Steinhauer, D.A. & Holland, J.J. (1987) Rapid evo^ lutionof RNA viruses. Annu. Rev. Microbiol. 41, 409-433.
- Strauss, J.H. & Strauss, E.G. (1988) Evolution of RNA viruses. Annu. Rev. Microbiol. 42, 657- 683.
- Stuhlmann, H. & Berg, P. (1992) Homologous recombination of copackaged retrovirus RNAs during reverse transcription. J. ViroL 66, 2378-2381.
- Tolskaya, E.A., Romanova, L.A., Blinow, V.M., Victorova, E.G., Sinyakov, A.N., Kolesnikova, M.S. & Agol, VI. (1988) Studies on the recombination between RNA genomes of poliovirus: The primary structure and nonrandom distribution of crossover regions in the genomes of intertypic poliovirus recombinants. Virology 161, 54-61.
- Tolskaya, E.A., Romanova, L.A., Kolesnikova, M.S. & Agol, VI. (1983) Intertypic recombination in poliovirus: Genetic and biochemical studies. Virology 124, 121-132C.
- Traynor, P. & Ahlquist, P. (1990) Use of bromovi- rus RNA hybrids to map cis- and irons-acting functions in a conserved RNA replication gene. J. ViroL 64, 69-77.
- Traynor, P., Young, B.M. & Ahlquist, P. (1991) Deletion analysis of brome mosaic virus 2a protein: Effects on RNA replication and systemic spread. J. ViroL 65, 2807-2815.
- Weiss, B.G. & Schlesinger, S. (1991) Recombination between Sindbis virus RNAs. J. ViroL 65, 4017-4025.
- White, K.A. & Morris, TJ. (1994) Recombination between defective tombusvirus RNAs generates functional hybrid genomes. Proc. Natl. Acad. ScL U.S.A 91, 3642-3646.
- Zaccomer, B., Haenni, A.-L. & Macaya, G. (1995) The remarkable variety of plant RNA virus genomes. J. Gen. ViroL 76, 231-247.
- Zhang, C., Cascone, P J. & Simon, A.E. (1991) Recombination between satellite and genomic RNAs of turnip crinkle virus. Virology 184, 791-794.
- Zhang, X. & Lai. M.M.C. (1994) Unusual heterogeneity of leader-mRNA fusion in a murine coro- navirus: Implications for the mechanism of RNA transcription and recombination. J. ViroL 68, 6626-6633.
Typ dokumentu
Bibliografia
Identyfikatory
Identyfikator YADDA
bwmeta1.element.agro-article-b05730a7-ab5a-40d9-9845-85ceeb66b1f2