Warianty tytułu
Języki publikacji
Abstrakty
The importance of glycosylation in biological events and the role it plays in glycoprotein function and structure is an area in which there is growing interest. In order to understand how glycosylation affects the shape or function of a protein it is however important to have suitable techniques available to obtain structural information on the oligosaccharides attached to the protein. For many years the complexity of the structures required sophisticated analytical techniques only available to a few specialist laboratories. In many cases these techniques were not available or required a large amount of material and therefore the number of glycoproteins which were fully characterised were relatively few. In recent years there have been substantial developments in the analysis of glycosylation which has significantly changed the capability to fully characterise molecules of biological interest. A number of different techniques are available which differ in terms of their complexity, the amount of information which is available from them, the skill needed to perform them and their cost. It is now possible for many laboratories who do not specialise in glycosylation analysis to obtain some information although this may be incomplete. These developments do, however, also make complete characterisation of a glycoprotein a much less daunting task and in many cases this can be performed more easily and with less starting material than was previously required. In this review a summary will be given of current techniques and their suitability for different types of analysis will be considered.
Wydawca
Czasopismo
Rocznik
Tom
Numer
Opis fizyczny
p.303-314,fig.
Twórcy
autor
- BioMed Laboratories, 28 Eastern Way, Ponteland, Newcastle-upon-Tyne NE 20 9PF, U.K., e-mail: tony@merryone.demon.co.uk
Bibliografia
- 1. Rudd, P.M. & Dwek, R.A. (1997) Rapid, sensitive sequencing of oligosaccharides from glycoproteins. Curr. Opin. Biotechnol. 8, 488- 497.
- 2. Rudd, P.M., Guile, G.R., Küster, B., Harvey, D.J., Opdenakker, G. & Dwek, R.A. (1997) Oligosaccharide sequencing technology. Nature 388, 205-207.
- 3. Kuster, B., Wheeler, S.F., Hunter, A.P., Dwek, R.A. & Harvey, D.J. (1997) Sequencing of N- linked oligosaccharides directly from protein gels: In gel deglycosylation followed by matrix assisted laser desorbtion/ionisation mass spectrometry and normal phase high performance liquid chromatography. Anal. Biochem. 250, 83-101.
- 4. Masada, R.I., Skop, E. & Starr, C.M. (1996) Fluorophore-assisted carbohydrate electrophoresis in the separation, analysis, and sequencing of carbohydrates. Biotechnol Appl Biochem. 24, 195-205.
- 5. Kohen, F., Bagci, H., Barnard, G., Bayer, E.A., Gayer, B., Schindler, D.G., Ainbinder, E. & Wilchek, M. (1997) Preparation and properties of anti-biotin antibodies. Methods Enzy- moL 279, 451-463.
- 6. Merry, A.H. & Stevenson, M. (1997) Detection of the presence of carbohydrates in glycoproteins; in A Laboratory Guide to Glycoconjugate Analysis (Jackson, P. & Gallagher, J.T., eds.) pp. 23-39, Bikhauser Verlag, Basel.
- 7. Plummer, T.H., Jr., Elder, J.H., Alexander, S., Phelan, A.W. & Tarentino, A.L. (1984) Demonstration of peptideiN-glycosidase F activity in endo-beta-iV-acetylglucosaminidase F preparations. J. Biol Chem. 259, 10700-10704.
- 8. O'Neil, R.A. (1996) Enzymatic release of oligosaccharides from glycoproteins for chromatographic and electrophoretic analysis. J. Chromat A 720, 201-215.
- 9. Taga, E.M., Waheed, A. & Van Etten, R.L. (1984) Structural and chemical characterization of a homogeneous peptide N-glycosidase from almond. Biochemistry 23, 815-822.
- 10. Tarentino, A.L. & Plummer, T.H., Jr. (1994) Enzymatic deglycosylation of asparagine- linked glycans: Purification, properties, and specificity of oligosaccharide-cleaving enzymes from Flavobacterium meningosepticum. Methods Enzymol 230, 44-57.
- 11. Trimble, R.B. & Tarentino, A.L. (1991) Identification of distinct endoglycosidase (endo) activities in Flavobacterium meningosepticum: endo Fl, endo F2, and endo F3. Endo Fl and endo H hydrolyze only high mannose and hybrid glycans. J. Biol. Chem. 266,1646-1651.
- 12. Endo, Y. & Kcbata, A. (1976) Partial purification and characterization of an endo-alpha-N- acetylgalactosaminidase from the culture of medium of Diplococcus pneumoniae. J. Bio- chem. (Tokyo) 80, 1-8.
- 13. Ishii-Karakasa, I., Iwase, H., Hotta, K., Tana- ka, Y. & Omura, S. (1992) Partial purification and characterization of an endo-alpha-iV-acety- lgalactosaminidase from the culture medium of Streptomyces sp. OH-11242. Biochem. J. 288 (Part 2), 475-482.
- 14. Gravel, P., Golaz, 0., Walzer, C., Hochstras- ser, D.F., Turler, H. & Balant, L.P. (1994) Analysis of glycoproteins separated by two- dimensional gel electrophoresis using lectin blotting revealed by chemiluminescence. Anal. Biochem. 221, 66-71.
- 15. Goodarzi, M.T. & Turner, G.A. (1997) A lectin method for investigating the glycosylation of nanogram amounts of purified glycoprotein. Glycoconj. J. 14, 493-496.
- 16. Harvey, D.J., Küster, B. & Naven, T.J. (1998) Perspectives in the glycosciences-matrix- assisted laser desorption/ionization (MALDI) mass spectrometry of carbohydrates. Glycoconj. J. 15, 333-338.
- 17. Duffin, K.L., Welply, I.K., Huang, E. & Hen- ion, J.D. (1992) Characterisation of N-linked oligosaccharides by electrospray and tandem mass spectrometry. Anal Chem. 64, 1440- 1452.
- 18. Carr, S.A., Barr, J.R., Roberts, G.D., Anu- mula, K.R. & Taylor, P.B. (1990) Identification of attachment sites and structural classes of asparagine-linked carbohydrates in glycoproteins. Methods Enzymol. 193, 501-518.
- 19. Medzihrad87.ky, K.F., Maltby, D.A., Hall, S.C., Settineri, C.A. & Burlingame, A.L. (1994) Characterisation of protein N-glycosylation by reversed-phase microbore liquid chromatogra- phy-electrospray mass spectrometry, complementary mobile phases and sequential exogly- cosidase digestion. J. Am. Soc. Mass Spec- trom. 5, 350-365.
- 20. Wada, Y., Gu, J.. Okamoto, N. & Inui, K. (1994) Diagnosis of carbohydrate-deficient glycoprotein syndrome by matrix-assisted laser desorption time-of-flight mass spectrometry. Biol. Mass Spectrom. 23, 108-109.
- 21. Carr, S.A., Huddleston, M.J. & Bean. M.F. (1993) Selective identification and differentiation of N- and O-linked oligosaccharides in glycoproteins by liquid chromatography-mass spectrometry. Protein Sci. 2, 183-196.
- 22. Huddleston, M.J., Bean, M.F. & Carr, S.A. (1993) Collisional fragmentation of glycopep- tides by electrospray ionization LC/MS and LC/MS/MS: Methods for selective detection of glycopeptides in protein digests. Anal. Chem. 65, 877-884.
- 23.Schwer, C. (1995) Capillary isoelectric focusing: A routine method for protein analysis? Electrophoresis 16, 2121-2126.
- 24. Iourin, 0., Mattu, T.S., Mian, N., Keir, G., Winchester, B., Dwek, R.A. & Rudd, P.M. (1996) The identification of abnormal glyco- forms of serum transferrin in carbohydrate deficient glycoprotein syndrome type I by capillary zone electrophoresis. Glycoconj. J. 13, 1031-1042.
- 25. Taverna, M., Tran, N.T., Merry, T., Horvath, E. & Ferrier, D. (1998) Electrophoretic methods for process and the quality assessment of recombinant glycoproteins. Electrophoresis 19, 2572-2594.
- 26. Yeung, B., Porter, T.J. & Vath, J.E. (1997) Direct isoform analysis of high-mannose- containing glycoproteins by on-line capillary electrophoresis electrospray mass spectrometry. Anal. Chem. 69. 2510-2516.
- 27. Denton, K.A. & Tate, S.A. (1997) Capillary electrophoresis of recombinant proteins. J. Chromatogr. B Biomed. Scu Appl. 697, 111- 121.
- 28. Teshima, G. & Wu, S.L. (1996) Capillary electrophoresis analysis of recombinant proteins. Methods Enzymol. 271, 264-293.
- 29. Strege, M.A. & Lagu, A.L. (1997) Capillary electrophoresis of biotechnology-derived proteins. Electrophoresis 13, 2343-2352.
- 30. Patel, T.P. & Parekh, R.B. (1994) Release of oligosaccharides from glycoproteins by hy- drazinolysis. Methods Enzymol 230, 57-66.
- 31. Hirani, S., Bernasconi, R.J. & Rasmussen, J.R. (1987) Use of N-glycanase to release asparagine-linked oligosaccharides for structural analysis. Anal Biochem. 162,485-492.
- 32. Mann, A.C., Self, C.H. & Turner, G.A. (1994) A general method for the complete deglycosy- lation of a wide variety of serum glycoproteins using peptide-iV-glycosidase F. Glycosylation & Disease 1, 253-261.
- 33. Patel, T., Bruce, J., Merry, A., Bigge, C., Wor- mald, M., ¿aques, A. & Parekh, R. (1993) Use of hydrazine to release in intact and unreduced form both N- and O linked oligosaccharides from glycoproteins. Biochemistry 32, 679-693.
- 34. Merry, A.H., Bruce, J., Bigge, C. & Ioannides, A. (1992) Automated simultaneous release of intact and unreduced N- and O-linked glycans from glycoproteins. Biochem. Soc. Trans. 20, 91S.
- 35. Takasaki, S. & Kobata, A. (1978) Microdeter- mination of sugar composition by radioisotope labeling. Methods Enzymol 50, 50-54.
- 36. Kuraya, N. & Hase, S. (1992) Release of 0- linked sugar chains from glycoproteins with anhydrous hydrazine and pyridylamination of the sugar chains with improved reaction conditions. J. Biochem. (Tokyo) 112, 122-126.
- 37.Stefansson, M. & Novotny, M. (1994) Separation of complex oligosaccharide mixtures by capillary electrophoresis in the open-tubular format. Anal Chem. 66, 1134-1144.
- 38. Jackson, P. (1994) The analysis of fluoro- phore-labeled glycans by high-resolution Polyacrylamide gel electrophoresis. Anal Biochem. 2 16, 243-252.
- 39. Bigge, J.C., Patel, T.P., Bruce, J.A., Goulding, P.N., Charles, S.M. & Parekh, R.B. (1995) Nonselective and efficient fluorescent labeling of glycans using 2-amino benzamide and an- thranilic acid. Anal. Biochem. 230, 229-238.
- 40. Honda, S. (1996) Separation of neutral carbohydrates by capillary electrophoresis. J. Chromatogr. A 720, 337-351.
- 41. Jackson, P. (1996) The analysis of fluoro- phore-labeled carbohydrates by Polyacrylamide gel electrophoresis. Mol Biotechnol 5, 101-123.
- 42. Hu, G.F. (1995) Fluorophore-assisted carbohydrate electrophoresis technology and applications. J. Chromatogr. A 705, 89-103.
- 43. Frears, E.R. & Axford, J.S. (1997) Fluoro- phore-labelled carbohydrate electrophoresis distinguishes rheumatoid arthritis from healthy individuals. Biochem. Soc. Trans. 25, S662.
- 44. Rice, K.G., Takahashi, N., Namiki, Y., Tran, A.D., Lisi, P.J. & Lee, Y.C. (1992) Quantitative mapping of the N-linked sialyloligosaccha- rides of recombinant erythropoietin: Combination of direct high-performance anion-ex- change chromatography and 2-aminopyridine derivatization. Anal Biochem. 206,278-287.
- 45. Townsend, R.R. & Hardy, M.R. (1991) Analysis of glycoprotein oligosaccharides using high-pH anion exchange chromatography. Gly- cobiology 1, 139-147.
- 46. Lee, Y.C. (1996) Analyses with high-performance anion-exchange chromatography. J. Chromatogr. A 720, 137-149.
- 47. Various Authors (1996) J. Chromatogr. A 720, 75-261.
- 48. Guile, G.R., Rudd, P.M., Wing, D.R., Prime, S.B. & Dwek, R.A. (1996) A rapid high- resolution high-performance liquid chromatographic method for separating glycan mixtures and analyzing oligosaccharide profiles. AnaL Biochem. 240, 210-226.
- 49. Anumula, K.R. & Dhume, S.T. (1998) High resolution and high sensitivity methods for oligosaccharide mapping and characterization by normal phase high performance liquid chromatography following derivatization with highly fluorescent anthranilic acid. Glyco- biology 8, 685-594.
- 50. Camilleri, P., Tolson, D. & Birrell, H. (1998) Direct structural analysis of 2-aminoacridone derivatized oligosaccharides by high-performance liquid chromatography/mass spectro- metric detection. Rapid Commun. Mass Spec- trom. 12, 144-148.
- 51. Rudd, P.M., Guile, G.R., Kuster, B„ Harvey, D.J., Opdenakker, G. & Dwek. R.A. (1997) Oligosaccharide sequencing technology. Nature 388, 205-207.
- 52. Rudd, P.M., Morgan, B.P., Wormald, M.R., Harvey, D.J., van den Berg, C.W., Davis, S.J., Ferguson, M.A. & Dwek, R.A. (1997) The gly- cosylation of the complement regulatory protein, human erythrocyte CD59. J. Biol Chem. 272, 7229-7244.
- 53. Takahashi, N. (1996) Three-dimensional mapping of N-linked oligosaccharides using ion- exchange. hydrophobic and hydrophilic interaction modes of high-performance liquid chromatography. J. Chromatgr. A 720, 217-225.
- 54. Harvey, D.J. (1997) in Glycopeptides and Related Compounds: Synthesis, Analysis and Applications (Large, D.G. & Warren, C.D., eds.) pp. 513-631, Marcel Dekker, New York.
- 55.Stahl, B., Thurl, S., Zeng, J., Karas, M., Hil- lenkamp, F, Steup, M. & Sawatzki, G. (1994) Oligosaccharides from human milk as revealed by matrix-assisted laser desorp- tion/ionization mass spectrometry. Anal Biochem. 223, 218-226.
- 56. Conboy, J.J. & Henion, J. (1992) High- performance anion exchange chromatography coupled with mass spectrometry for the determination of carbohydrates. Biol. Mass Spec- trom. 21, 387-402.
- 57. Hellerqvist, C.G. (1990) Linkage analysis using Lindberg method. Methods Enzymol. 193, 554-573.
- 58. Taverna, M., Baillet, A., Schluter, M. & Bay- locq-Ferrier, D. (1995) N-glycosylation site mapping of recombinant tissue plasminogen activator by micellar electrokinetic capillary chromatography. Biomed. Chromatogr. 9, 59- 67.
- 59. Camilleri, P., Hartland, G.B. & Okafo, G. (1995) High resolution and rapid analysis of branched oligosaccharides by capillary electrophoresis. Anal Biochem. 230, 115-122.
- 60. Oefner, P.J. & Chiesa, C. (1994) Capillary electrophoresis of carbohydrates. Glycobiology 4, 397-412.
- 61. El Rassi, Z. & Mechref, Y. (1996) Recent advances in capillary electrophoresis of carbohydrates. Electrophoresis 17, 275-301.
- 62. Vliegenthart, J.F.G., Dorland, L. & van Hal- beek, H. (1983) High-resolution lH-nuclear magnetic resonance spectroscopy as a tool in the structural analysis of carbohydrates related to proteins. Adv. Carbohydr. Chem. Biochem, 41, 209-374.
- 63. Dwek, R.A., Edge, C.J., Harvey, D.J., Wormald, M.R. & Parekh, R.B. (1993) Analysis of glycoprotein-associated oligosaccharides. Annu. Rev. Biochem. 62, 65-100.
Typ dokumentu
Bibliografia
Identyfikatory
Identyfikator YADDA
bwmeta1.element.agro-article-70e500b9-638e-4742-8980-16fa8329feed