Warianty tytułu
Języki publikacji
Abstrakty
Proteinase inhibitors from squash seeds were analyzed for mutational variability. The non-homologous positions were subjected to an analysis of the interrelation between occurring residues and the mechanism of variability, using the algorithm of genetic semihomology [1]. The study also concerned mutational correlation at particular positions and their contact with each other. It was observed that: the number of residues occupying particular positions varies from 1 to 8 the mechanism of variability is based on single point mutation the variable positions are seldom in contact with each other the mutations in distant positions (not in contact with each other) are correlated with each other the correlated mutations refer to those positions which are far from the reactive site of the inhibitor the mutational variability in primary structure within this family is not consistent with the Markovian model of amino acid replacement.
Słowa kluczowe
Wydawca
Czasopismo
Rocznik
Tom
Numer
Opis fizyczny
p.91-106,fig.
Twórcy
autor
- University of Wroclaw, 50-137 Wroclaw, Tamka 2, Poland
Bibliografia
- 1. Leluk, J. A new algorithm for analysis of the homology in protein primary structure. Computers Chem. 22 (1998) 123-131.
- 2. Chen, X.-M., Qian, Y.-W., Chi, Ch.-W., Gan, K.-D., Zhang, M.-F. and Chen, Ch.-Q. Chemical synthesis, molecular cloning, and expression of the gene coding for the Trichosanthes trypsin inhibitor-a squash family inhibitor. J. Biochem. (Tokyo) 112 (1992) 45-51.
- 3. Haldar, U. C., Saha, S. K., Beavis, R. C. and Sinha, N. K. Trypsin inhibitors from ridged gourd (Luffa acutangula Linn.) seeds: purification, properties, and amino acid sequences. J. Protein Chem. 15 (1996) 177-184.
- 4. Hamato, N., Koshiba, T., Pham, T.-N., Tatsumi, Y., Nakamura, D., Takano, R., Hayashi, K., Hong, Y.-M. and Hara, S. Trypsin and elastase inhibitors from bitter gourd (Momordica charantia Linn.) seeds: purification, amino acid sequences, and inhibitory activities of four new inhibitors. J. Biochem. (Tokyo) 117 (1995) 432-437.
- 5. Hatakeyama, T., Hiraoka, M. and Funatsu, G. Amino acid sequences of the two smallest trypsin inhibitors from sponge gourd seeds. Agric. Biol. Chem. 55 (1991) 2641-2642.
- 6. Hayashi, K., Takehisa, T., Hamato, N., Takano, R., Hara, S., Miyata, T. and Kato, H. Inhibition of serine proteases of the blood clotting coagulation system by squash family protease inhibitors. J. Biochem. 116 (1994) 1013- 1018.
- 7. Heitz, A., Chiche, L., Le-Nguyen, D. and Castro, B. 1H 2D NMR and distance geometry study of the folding of Ecballium elaterium trypsin inhibitor, a member of the squash inhibitors family. Biochemistry 28 (1989) 2392-2398.
- 8. Joubert, F. J. Trypsin isoinhibitors from Mormodica repens seeds. Phytochemistry 23 (1984) 1401-1406.
- 9. Lee, Ch.-F. and Lin, J.-Y. Amino acid sequences of trypsin inhibitors from the melon Cucumis melo. J. Biochem. 118 (1995) 18-22.
- 10. Ling, M.-H., Qi, H.-Y. and Chi, Ch.-W. Protein, cDNA, and genomic DNA sequences of the towel gourd trypsin inhibitor. A squash family inhibitor. J. Biol. Chem. 268 (1993) 810-814.
- 11. Matsuo, M., Hamato, N., Takano, R., Kamei-Hayashi, K., Yasuda- Kamatani, Y., Nomoto, K. and Hara, S. Trypsin inhibitors from bottle gourd (Lagenaria leucantha Rusby var. Depressa Makino) seeds. Purification and amino acid sequences. Biochim. Biophys. Acta 1120 (1992) 187-192.
- 12. Nishino, J., Takano R, Kamei-Hayashi K., Minakata H., Nomoto K. and Hara S. Amino acid sequences of trypsin inhibitors from oriental pickling melon (Cucumis melo L. var. Conomon Makino) seeds. Biosci. Biotech. Biochem. 56 (1992) 1241-1246.
- 13. Otlewski, J., Whatley, H., Polanowski, A. and Wilusz, T. Amino-acid sequences of trypsin inhibitors from watermelon (Citrullus vulgaris) and red bryony (Bryonia dioica) seeds. Biol. Chem. Hoppe-Seyler 368 (1987) 1505-1507.
- 14. Stachowiak, D., Polanowski, A., Bieniarz, G. and Wilusz, T. Isolation and amino-acid sequence of two inhibitors of serine proteinases, members of the squash inhibitor family, from Echinocystis lobata seeds. Acta Biochim. Polon. 43 (1996) 507-514.
- 15. Wieczorek, M., Otlewski, J., Cook, J., Parks, K., Leluk, J., Wilimowska- Pelc, A., Polanowski, A., Wilusz, T. and Laskowski, M. Jr. The squash family of serine proteinase inhibitors. Amino acid sequences and association equilibrium constants of inhibitors from squash, summer squash, zucchini, and cucumber seeds. Biochem. Biophys. Res. Commun. 126 (1985) 646-652.
- 16. Otlewski, J. and Krowarsch, D. Squash inhibitor family of serine proteinases. Acta Biochim. Polon. 43 (1996) 431-444.
- 17. Krishnamoorthi, R., Gong, Y.-X. and Richardson, M. A new protein inhibitor of trypsin and activated Hageman factor from pumpkin (Cucurbita maxima) seeds. FEBS Lett. 273 (1990) 163-167.
- 18. Wynn, R. and Laskowski, Jr M. Inhibition of human β-factor XIIA by squash family serine proteinase inhibitors. Biochem. Biophys. Res. Commun. 166 (1990) 1406-1410.
- 19. Helland, R., Berglund, G. I., Otlewski, J., Apostoluk, W., Andersen, O. A., Willassen, N. P. and Smalås, A. O. High-resolution structures of three new trypsin-squash-inhibitor complexes: a detailed comparison with other trypsins and their complexes. Acta Cryst. D55 (1999) 139-148.
- 20. Bode, W., Greyling, H. J., Huber, R., Otlewski, J. and Wilusz, T. The refined 2.0 A X-ray crystal structure of the complex formed between bovine beta-trypsin and CMTI-I, a trypsin inhibitor from squash seeds (Cucurbita maxima). Topological similarity of the squash seed inhibitors with the carboxypeptidase A inhibitor from potatoes. FEBS Lett. 242 (1989) 285-292.
- 21. Holak, T. A., Gondol, D., Otlewski, J. and Wilusz, T. Determination of the complete three-dimensional structure of the trypsin inhibitor from squash seeds in aqueous solution by nuclear magnetic resonance and a combination of distance geometry and dynamical simulated annealing. J. Mol. Biol. 210 (1989) 635-648.
- 22. Huang, Q., Liu, S. and Tang, Y. Refined 1.6-A resolution crystal structure of the complex formed between porcine beta-trypsin and MCTI-A, a trypsin inhibitor of the squash family. Detailed comparison with bovine beta-trypsin and its complex. J. Mol. Biol. 229 (1993) 1022-1030.
- 23. Chiche, L., Gaboriaud, C., Heitz, A., Mornon, J.-P., Castro, B. and Kollman, P. A. Use of restrained molecular dynamics in water to determine three-dimensional protein structure: prediction of the three-dimensional structure of Ecballium elaterium trypsin inhibitor II. Proteins 6 (1989) 405-417.
- 24. Heitz, A., Chiche, L. and Castro, B. Folding of the squash trypsin inhibitor EETI II. Evidence of native and non-native local structural preferences in a linear analogue. Eur. J. Biochem. 233 (1995) 837-846.
- 25. Siemion, I. Z., Wilusz, T. and Polanowski, A. On the genetic and structural similarities between the squash seeds polypeptide trypsin inhibitors and wheat germ agglutinin. Mol. Cell. Biochem. 60 (1984) 159-161.
- 26. Popik, W., Inglot, A. D., Wilusz, T. and Polanowski, A. Participation of polypeptide proteinase inhibitors in proliferration of fibroblasts. Arch. Immunol. Ther. Exp. 36 (1988) 645-653.
- 27. Wiśniowska, J., Rudnicki, K., Leluk, J. and Szopa, J. An endogenous RNA-synthesis-promoting oligopeptide from Cucurbita pepo var. patissonina. Planta 173 (1988) 46-51.
- 28. Schuler, G. D., Altschul, S. F. and Lipman, D. J. A workbench for multiple alignment construction and analysis. Proteins 9 (1991) 180-191.
- 29. Guex, N. and Peitsch, M. C. Swiss-PdbViewer: A Fast and Easy-to-use PDB Viewer for Macintosh and PC. Protein Data Bank Quaterly Newsletter 77 (1996) 7.
- 30. Guex, N. and Peitsch, M. C. SWISS-MODEL and the Swiss-Pdb Viewer: An environment for comparative protein modeling. Electrophoresis 18 (1997) 2714-2723.
- 31. Dayhoff, M. O. and Eck, R. V. Atlas of Protein Sequence and Structure (Dayhoff, M. O. and Eck, R. V., eds.) Vol. 3, p. 33 (1968). National Biomedical Research Foundation, Silver Spring, MD.
- 32. Dayhoff, M. O., Schwartz, R. M. and Orcutt, B. C. Atlas of Protein Sequence and Structure (Dayhoff, M. O., ed.) Vol. 5, Suppl. 3, p. 345 (1979). National Biomedical Research Foundation, Washington, DC.
- 33. Wilusz, T., Wieczorek, M., Polanowski, A., Denton, A., Cook, J. and Laskowski, M., Jr. Amino-acid sequence of two trypsin isoinhibitors, ITD I and ITD III from squash seeds (Cucurbita maxima). Hoppe-Seyler's Z. Physiol. Chem. 364.(1983) 93-95.
- 34. Favel, A., Mattras, H., Coletti-Previero, M. A., Zwilling, R., Robinson, E. A. and Castro, B. Protease inhibitors from Ecballium elaterium seeds. Int. J. Peptide Protein Res. 33 (1989) 202-208.
- 35. Hara, S., Makino, J. and Ikenaka, T. Amino acid sequences and disulfide bridges of serine proteinase inhibitors from bitter gourd (Momordica charantia Linn.) seeds. J. Biochem. 105 (1989) 88-92.
- 36. Hamato, N., Takano, R., Kameihayashi, K. and Hara, S. Purification and characteriazation of serine proteinase inhibitors from gourd (Lagenaria leucantha Rusby var. Gourda Makino) seeds. Bioscience Biotechnol. Biochem. 56 (1992) 275-279.
- 37. Huang, Z., Wu, M., Qi, Z. and Chi, C. Total synthesis of Trichosanthes trypsin inhibitor and its analogue. Science in China B33 (1990) 1192-1200.
- 38. Hakateyama, T., Hiraoka, M. and Funatsu, G. Amino acid sequence of the two smallest trypsin inhibitors from sponge gourd seeds. Agric. Biol. Chem. 10 (1991) 2641-2642.
- 39. Laskowski, M. Jr, Kato, I., Kohr, W. J., Park, S. J., Tashiro, M. and Whatley, H. E. Positive Darwinian selection in evolution of protein inhibitors of serine proteinases. Cold Spring Harbor Symposia on Quantitative Biology Vol. LII (1987) 545-553.
- 40. Hill, R. E. and Hastie, N. D. Accelerated evolution in the reactive centre regions of serine protease inhibitors. Nature 326 (1987) 96-99
- 41. Czapińska, H. and Otlewski, J. Structural and energetic determinants of the S1-site specificity in serine proteases. Eur. J. Biochem. 260 (1999) 571 -595.
- 42. George, D. G., Barker, W. C. and Hunt, L. T. Mutation data matrix and its uses. In: Methods in Enzymology (Doolittle, R. F., ed.), Vol. 183 (1990) p. 337, Academic Press, San Diego, CA.
- 43. Neher, E. How frequent are correlated changes in families of protein sequences? Proc. Natl. Acad. Sci. USA 91 (1994) 98-102.
Typ dokumentu
Bibliografia
Identyfikatory
Identyfikator YADDA
bwmeta1.element.agro-article-6dfe2b79-2fbd-46ee-84a9-474cb6b9b1a6