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New data are presented on the interaction of model synthetic peptides containing an arginine-rich region of human immunodeficiency virus (HIV-Tat), with native RNA molecules: tRNA Phe of Saccharomyces cerevisiae and 5S rRNA from Lupinas luteus. Both RNA species form complexes with the Tatl (GRKKRRQRRRA) and Tat2 (GRKKRRQRRRAPQDSQTHQASLSKQPA) pep- tides, as shown by electrophoretic gel shift and RNase footprint assays, and CD measurements. The nucleotide sequence UGGG located in the dihydrouridine loop of tRNA Phe as well as in the loop D of 5S rRNA is specifically protected against RNases. Our data indicate direct interactions of guanine of RNA moieties with argininc residues. These interactions seem similar to those observed in DNA-protein complexes, but different from those previously observed in the TAR RNA-Tat complexes.
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p.591-600,fig.
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- Polish Academy of Sciences, Z.Noskowskiego 12-14, 61-704 Poznan, Poland
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Bibliografia
- 1. Freemont, P.S., Lane, A.N. & Sanderson, M.R. (1991) Structural aspects of protein DNA recognition. Biochem. J. 278, 1-23.
- 2. Otwinowski, Z., Schevitz, R.V., Zhang, R.G., Lawson, C.L., Joachimiak, A., Marmorstein, R.Q., Luisi, B.F. & Sigler, P.B. (1988) Crystal structure of trp repressor/operator complex at atomic resolution. Nature (Ix>ndon) 335, 321-326.
- 3. Suzuki, M. & Yagi, N. (1994) DNA recognition code of transcription factor in the helix-turn- helix, probe helix, hormone receptor and zinc finger families. Proc. Natl. Acad. Sci. U.S.A. 91, 12357-12361.
- 4. Choo, Y. & Kiug, A. (1994) Toward a code for the interactions of zinc fingers with DNA: Selection of randomized fingers displayed on phage. Proc. Natl. Acad. Sci. U.S.A. 91, 11163-11167.
- 5. Greisman, H.A. & Pabo, C.O. (1997) A general strategy for selecting high affinity zinc finger proteins for diverse DNA target sites. Science 275, 657-661.
- 6. Mattaj, I.W. (J993) RNA-recognition: A family matter. Cell 73, 837-840.
- 7. Rould, M.A., Perona, J.J., Soll, D. & Steitz, T.A. (1989) Structure of E. coli glutaminvl- tRNA synthetase complexed with tRNAGln and ATP at 2.8 A resolution. Science 246, 1136-1142.
- 8. Ruff, M., Krishnavarmy, S., Boeglin, M., Po- terszman, A., Mitschler, A., Podjarny, A., Rees, B., Thierry, J.C. & Moras, D. (1991) Class II aminoacyl transfer RNA synthetases: cryst al structure of yeast aspartyl-tRNA synthetase complexed with tRNAA*p. Science 252, 1682-1689.
- 9. Biou, V., Yaremchuk, A., Tukalo, M. & Cusack, S. (1994) The 2.9 A crystal structure of T. termophilus seryl-tRNA synthetase complexed with IRKA^. Science 263,1404-1410.
- 10. Valegard, K., Murray, J.B., Stockley, P.G., Stonehouse, N.J. & Liljas, L. (1994) Crystal structure of an RNA bacteriophage coat protein-operator complex. Nature (London) 371, 623-626.
- 11. Oubridge, C., Ito, N., Evans, P.R., Teo, C.H. & Nagai, K. (1994) Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A splicesomal protein complexed with an RNA hairpin. Nature (London) 372, 432-438.
- 12. Burd, C.G. & Dreyfuss, G. (1994) Conserved structures and diversity of function of RNA- binding proteins. Science 265, 615-621.
- 13. Lazinski, D., Grzqdzielska, E. & Das, A. (1989) Sequence specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine rich motif. Cell 59, 207-218.
- 14. Chen, L. & Frankel, A.D. (1994) An RNA- -binding peptide from bovine immunodeficiency virus Tat protein recognizes an un-usual RNA structure. Biochemistry 33, 2708-2715.
- 15. Weeks, K.M., Ampe, Ch., Schultz, A.S., Steitz, T.A. & Crothers, D.M. (1990) Fragments of the HIV-1 Tat protein specifically bind TAR RNA. Science 249, 1281-1285.
- 16. Puglisi, D., Tan, R., Calnan, B.J., Frankel, A.D. & Williamson, J.R. i 1992) Conformation of the TAR RNA arginine complex by NMR spectroscopy. Science 257, 76-80.
- 17. Puglisi, D., Chen, L., Krankel, A.D. & Williamson, J.R. (1993) Role of RNA structure in arginine recognition ofTAR RNA. Proc. Natl. Acad. Sei. U.S.A. 90, 3680-3684.
- 18. Aboul-ela, F., Karn, J. & Varani, G. (1995) The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat-protein. J. Mol. Biol. 253, 313-332.
- 19. Mujecb, A., Parslow. T.G., Yuan, Y.-Ch. & James, T.L. (1996) Aqueous solution structure of a hybrid Lentiviral Tat peptide and a model of its interaction with HIV-1 TAR RNA. J. Biomolec. Struct. Dynamics 13, 649-660.
- 20. Kim, S.H., Suddath, F.L., Quingley, G.J., McPherson. A., Sussman, J.L., Wang, A.H., J., Seeman, N.C. & Rich, A. (1974) Three dimensional tertiary structure of yeast phenylalanine transfer RNA. Science 185, 435-440.
- 21. Joachimiak. A., Nalaskowska, M., Bar- ciszewska, M., Mashkova, T.D. & Bar- ciszewski, J. (1990) Higher plant 5S rRNAs share common secondary structure. A new three domains model. Int. J. Biol. Macromol. 12, 321-327.
- 22. Horiki, K., łgano, K. & Inouge, K. (1978) Amino acids and peptides. Part 6. Synthesis of the Marrifield resin esters of N-protected amino acid of hydrogen bonding. Cheni. I,ett. 165-168.
- 23. Barciszewska, M., Mashkova, T.D., Zwierzyński, T., Kisselev, L.L. & Barciszewski, J. (1986) The primary structure of yellow lupin seeds 5S ribosomal RNA. Bull. Acad. Polon. Sei. 34, 369-373.
- 24. Barciszewska, M., Dirheimcr, G. & Keith, G. (1983) The nucleotide sequence of methionine elongator tRNA from wheat germ. Biochem. Biophys. Res. Commun. 114, 1161-1168.
- 25. Pieler, T. & Erdmann, V.A. (1982) Three dimensional structural model of eubacterial 5S RNA that has functional implications. Proc. Natl. Acad. Sei. U.S.A. 79, 4599-4603.
- 26. Pavletich, N.P. & Pabo, C.O. (1991) Zinc finger — DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 A. Science 252, 809-817.
- 27. Loret, E.P., Vives, E.t Ho Shing, P., Rochat, H., Rietschoten, J.V. & Johnson, W.C., Jr. (1991) Activating region of HIV-1 Tat protein: Vacuum UV circular dichroism and energy minimization. Biochemistry 30, 6013-6023.
- 28. Tan, R. & Frankel, A.D. (1992) Circular dichroism studies suggest that TAT RNA changes conformation upon specific binding of arginine to guanidine. Biochemistry 31, 10288-10294.
- 29. Loret, E.P., Georgel, P., Johnson, W.C., Jr. & Shing Ho, P. (1992) Circular dichroism and molecular modeling yield a structure for the complex of human immunodeficiency virus type 1 trans-activation response RNA and the binding region of Tat. the trans-acting transcriptional activator. Proc. Natl. Acad. Sei. U.S.A. 89, 9734-9738.
- 30. Barciszewska, M.Z., Erdmann, V.A. & Barciszewski, J. (1995) Ribosomal 5S RNA: Tertiary structure and interactions with proteins. Biol. Reu. (Cambridge) 71, 1-25.
- 31. Lin. H.C. & Patel, D.J. (1996) Encapsulating an amino acid in a DNA fold. Nature Struct. Biol. 3, 1046-1060.
Typ dokumentu
Bibliografia
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bwmeta1.element.agro-article-65e33cd1-d181-45ec-80cc-1dd0a2bc26d0