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2013 | 62 | 1 |
Tytuł artykułu

Integrative vectors for gene deletion and replacement

Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
An improved method for gene deletion or replacement in Escherichia coli was developed. It employs a set of integrative vectors and two helper plasmids, as a temporary source of RecA and Flp activities. The integrative vectors combine several useful features including three different selection markers placed between two parallel oriented Flp recombinase target (FRT) sites. Each marker is flanked by two MCSs, for cloning the chosen homologous fragments of DNA to gene targeting. The vectors contain two properly oriented E. coli Chi sites for recombination enhancement. When required, selection markers can be excised from the chromosome resulting in unmarked strains.
Wydawca
-
Rocznik
Tom
62
Numer
1
Opis fizyczny
p.77-80,fig.,ref.
Twórcy
autor
  • Department of Microbiology, University of Gdansk, Wita Stwosza 59, 80-308 Gdansk, Poland
  • Department of Microbiology, University of Gdansk, Wita Stwosza 59, 80-308 Gdansk, Poland
autor
  • Department of Microbiology, University of Gdansk, Wita Stwosza 59, 80-308 Gdansk, Poland
autor
  • Department of Microbiology, University of Gdansk, Wita Stwosza 59, 80-308 Gdansk, Poland
Bibliografia
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  • Cherepanov P.P. and W. Wackernagel. 1995. Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flpcatalyzed excision of the antibiotic-resistance determinant. Gene 158: 9–14.
  • Dabert P., S.D. Ehrlich and A. Gruss. 1992. χ sequence protects against RecBCD degradation of DNA in vivo. Proc. Natl. Acad. Sci. USA 89: 12073–12077.
  • Dabert P. and G.R. Smith. 1997. Gene replacement with linear DNA fragments in wild-type Escherichia coli: enhancement by Chi Sites. Genetics 145: 877–889.
  • Datsenko K.A. and B.L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci USA 97: 6640–6645.
  • Feher T., V. Burland and G. Posfai. 2012. In the fast line: Largescale bacterial genome engineering. J. Biotechnol. 160:72–79.
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  • Hamilton C.M., M. Aldea, B.K. Washburn, P. Babitzke and S.R. Kushner. 1989. New method for generating deletions and gene replacements in Escherichia coli. J. Bacteriol. 171: 4617–4622.
  • Jasin M. and P. Schimmel. 1984. Deletion of an essential gene in Escherichia coli by site-specific recombination with linear DNA fragments. J. Bacteriol. 159: 783–786.
  • Jessen J.R., A. Meng, R.J. McFarlane, B.H. Paw, L.I. Zon, G.R. Smith and S. Lin. 1998. Modification of bacterial artificial chromosomes through Chi-stimulated homologous recombination and its application in zebrafish transgenesis. Proc. Natl. Acad. Sci. USA 95: 5121–5126.
  • Karoui El M., S.K. Amundsen, P. Dabert and A. Gruss. 1999. Gene replacement with linear DNA in electroporated wild-type Escherichia coli. Nucleic Acids Res. 27: 1296–1299.
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  • Meselson M. and R. Yuan. 1968. DNA restriction enzyme from E. coli. Nature 217: 1110–1114.
  • Miller J.H. 1972. Experiments in Molecular Genetics. Cold Spring Harbor, NY. Cold Spring Harbor Laboratory, 352–355.
  • Posfai G., M. Koob, Z. Hradecna, N. Hasan, M. Filutowicz and W. Szybalski. 1994. In vivo excision and amplification of large segments of the Escherichia coli genome. Nucleic Acids Res. 22: 2392–2398.
  • Posfai G., M.D. Koob, H.A. Kirkpatrick and F.R. Blattner. 1997. Versatile insertion plasmids for targeted genome manipulations in bacteria: isolation, deletion, and rescue of the pathogenicity island LEE of the Escherichia coli O157:H7 genome. J. Bacteriol. 179: 4426–4428.
  • Reece K.R. and G.J. Phillips. 1995. New plasmids carrying antibiotic-resistance cassettes. Gene 165: 141–142.
  • Roca A.I. and M.M. Cox. 1997. RecA protein: structure, function, and role in recombinational DNA repair. Prog. Nucleic Acid Res. Mol. Biol. 56: 129–223.
  • Sektas M. 2000. The application of homologous recombinationbased methods for genetic engineering of bacteria (in Polish). Post. Mikrobiol. 39: 199–215.
  • Sektas M., N. Hasan and W. Szybalski. 2001. Expression plasmid with a very tight two-step control: Int/att-mediated gene inversion with respect to the stationary promoter. Gene 267: 213–220.
  • Sektas, M. and W. Szybalski. 1998. Tightly controlled two-stage expression vectors employing the Flp/FRT-mediated inversion of cloned genes. Mol. Biotechnol. 9: 17–24.
  • Smith G.R. 2012. How RecBCD enzyme and Chi promote break repair and recombination: a molecular biologist’s view. Microbiol. Mol. Biol. Rev. 76: 217–228.
  • Wild J., M. Sektas M., Z. Hradecna and W. Szybalski W. 1998. Targeting and retrofitting pre-existing libraries of transposon insertions with FRT and oriV elements for in-vivo generation of large quantities of any genomic fragment. Gene 223: 55–66.
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Typ dokumentu
Bibliografia
Identyfikatory
Identyfikator YADDA
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