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1

Application of the compress sensing theory for improvement of the TOF resolution in a novel J-PET instrument

Raczyński L., Moskal P., Kowalski P., Wiślicki W., Bednarski T., Białas P., Czerwiński E., Gajos A., Kapłon Ł., Kochanowski A., Korcyl G., Kowal J., Kozik T., Krzemień W., Kubicz E., Niedźwiecki S., Pałka M., Rudy Z., Salabura P., Gupta-Sharma N., Silarski M., Słomski A., Smyrski J., Strzelecki A., Wieczorek A., Zieliński M., Zoń N.

Nukleonika

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2016

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Vol. 61, No. 1

35--39

EN

Nowadays, in positron emission tomography (PET) systems, a time of fl ight (TOF) information is used to improve the image reconstruction process. In TOF-PET, fast detectors are able to measure the difference in the arrival time of the two gamma rays, with the precision enabling to shorten signifi cantly a range along the line-of-response (LOR) where the annihilation occurred. In the new concept, called J-PET scanner, gamma rays are detected in plastic scintillators. In a single strip of J-PET system, time values are obtained by probing signals in the amplitude domain. Owing to compressive sensing (CS) theory, information about the shape and amplitude of the signals is recovered. In this paper, we demonstrate that based on the acquired signals parameters, a better signal normalization may be provided in order to improve the TOF resolution. The procedure was tested using large sample of data registered by a dedicated detection setup enabling sampling of signals with 50-ps intervals. Experimental setup provided irradiation of a chosen position in the plastic scintillator strip with annihilation gamma quanta.

2

Independent component analysis of EEG data for EGI system

Gajos A., Wójcik G. M.

Bio-Algorithms and Med-Systems

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2016

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Vol. 12, no. 2

67--72

EN

Component analysis is one of the most important methods used for electroencephalographic (EEG) signal decomposition, and the so-called independent component analysis (ICA) is commonly used. The main function of the ICA algorithm is to find a linear representation of non-Gaussian data whose elements are statistically independent or at least as independent as possible. There are many commercial solutions for EEG signal acquisition. Usually, together with the EEG, one gets a dedicated software to handle the signal. However, quite often, the software does not provide researchers with all necessary functions. A high-performance, dense-array EGI-EEG system is distributed with the NetStation software. Although NetStation is a powerful tool, it does not have any implementation of the ICA algorithm. This causes many problems for researchers who want to export raw data from the amplifier and then work on it using some other tools such as EEGLAB for MATLAB, as these data are not fully compatible with the EGI format. We will present the C++ implementation of ICA that can handle filtered data from the EGI with better affordability. Our tool offers visualization of raw signal and ICA algorithm results and will be distributed under Freeware license.

3

Studies of unicellular microorganisms Saccharomyces cerevisiae by means of positron annihilation lifetime spectroscopy

Kubicz E., Jasińska B., Zgardzińska B., Bednarski T., Białas P., Czerwiński E., Gajos A., Gorgol M., Kamińska D., Kapłon Ł., Kochanowski A., Korcyl G., Kowalski P., Kozik T., Krzemień W., Niedźwiecki S., Pałka M., Raczyński L., Rajfur Z., Rudy Z., Rundel O., Sharma N. G., Silarski M., Słomski A., Strzelecki A., Wieczorek A., Wiślicki W., Zieliński M., Moskal P.

Nukleonika

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2015

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Vol. 60, No. 4, part 1

749--753

EN

Results of positron annihilation lifetime spectroscopy (PALS) and microscopic studies on simple microorganisms, brewing yeasts, are presented. Lifetime of ortho-positronium (o-Ps) were found to change from 2.4 to 2.9 ns (longer-lived component) for lyophilized and aqueous yeasts, respectively. Also hygroscopicity of yeasts in time was examined, allowing to check how water – the main component of the cell – affects PALS parameters, thus lifetime of o-Ps were found to change from 1.2 to 1.4 ns (shorter-lived component) for the dried yeasts. The time sufficient to hydrate the cells was found below 10 hours. In the presence of liquid water, an indication of reorganization of yeast in the molecular scale was observed. Microscopic images of the lyophilized, dried, and wet yeasts with best possible resolution were obtained using inverted microscopy (IM) and environmental scanning electron microscopy (ESEM) methods. As a result, visible changes to the surface of the cell me mbrane were observed in ESEM images.

4

Searches for discrete symmetries violation in ortho-positronium decay using the J-PET detector

Kamińska D., Gajos A., Czerwiński E., Bednarski T., Białas P., Gorgol M., Jasińska B., Kapłon Ł., Korcyl G., Kowalski P., Kozik T., Krzemień W., Kubicz E., Niedźwiecki S., Pałka M., Raczyński L., Rudy Z., Rundel O., Sharma N. G., Silarski M., Słomski A., Strzelecki A., Wieczorek A., Wiślicki W., Zieliński M., Zgardzińska B., Moskal P.

Nukleonika

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2015

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Vol. 60, No. 4, part 1

729--732

EN

In this paper, we present prospects for using the Jagiellonian positron emission tomograph (J-PET) detector to search for discrete symmetries violations in a purely leptonic system of the positronium atom. We discuss tests of CP and CPT symmetries by means of ortho-positronium decays into three photons. No zero expectation values for chosen correlations between ortho-positronium spin and momentum vectors of photons would imply the existence of physics phenomena beyond the standard model. Previous measurements resulted in violation amplitude parameters for CP and CPT symmetries consistent with zero, with an uncertainty of about 10−3. The J-PET detector allows to determine those values with better precision, thanks to the unique time and angular resolution combined with a high geometrical acceptance. Achieving the aforementioned is possible because of the application of polymer scintillators instead of crystals as detectors of annihilation quanta.

5

Reconstruction of hit time and hit position of annihilation quanta in the J-PET detector using the Mahalanobis distance

Sharma N. G., Silarski M., Bednarski T., Białas P., Czerwiński E., Gajos A., Gorgol M., Jasińska B., Kamińska D., Kapłon Ł., Korcyl G., Kowalski P., Kozik T., Krzemień W., Kubicz E., Niedźwiecki S., Pałka M., Raczyński L., Rudy Z., Rundel O., Słomski A., Strzelecki A., Wieczorek A., Wiślicki W., Zieliński M., Zgardzińska B., Moskal P.

Nukleonika

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2015

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Vol. 60, No. 4, part 1

765--769

EN

The J-PET detector being developed at the Jagiellonian University is a positron emission tomograph composed of the long strips of polymer scintillators. At the same time, it is a detector system that will be used for studies of the decays of positronium atoms. The shape of photomultiplier signals depends on the hit time and hit position of the gamma quantum. In order to take advantage of this fact, a dedicated sampling front-end electronics that enables to sample signals in voltage domain with the time precision of about 20 ps and novel reconstruction method based on the comparison of examined signal with the model signals stored in the library has been developed. As a measure of the similarity, we use the Mahalanobis distance. The achievable position and time resolution depend on the number and values of the threshold levels at which the signal is sampled. A reconstruction method as well as preliminary results are presented and discussed.

6

Processing optimization with parallel computing for the J-PET scanner

Krzemień W., Bała M., Bednarski T., Białas P., Czerwiński E., Gajos A., Gorgol M., Jasińska B., Kamińska D., Kapłon Ł., Korcyl G., Kowalski P., Kozik T., Kubicz E., Niedźwiecki S., Pałka M., Raczyński L., Rudy Z., Rundel O., Sharma N. G., Silarski M., Słomski A., Stola K., Strzelecki A., Trybek D., Wieczorek A., Wiślicki W., Zieliński M., Zgardzińska B., Moskal P.

Nukleonika

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2015

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Vol. 60, No. 4, part 1

745--748

EN

The Jagiellonian Positron Emission Tomograph (J-PET) collaboration is developing a prototype time of flight (TOF)-positron emission tomograph (PET) detector based on long polymer scintillators. This novel approach exploits the excellent time properties of the plastic scintillators, which permit very precise time measurements. The very fast fi eld programmable gate array (FPGA)-based front-end electronics and the data acquisition system, as well as low- and high-level reconstruction algorithms were specially developed to be used with the J-PET scanner. The TOF-PET data processing and reconstruction are time and resource demanding operations, especially in the case of a large acceptance detector that works in triggerless data acquisition mode. In this article, we discuss the parallel computing methods applied to optimize the data processing for the J-PET detector. We begin with general concepts of parallel computing and then we discuss several applications of those techniques in the J-PET data processing.

7

PALS investigations of free volumes thermal expansion of J-PET plastic scintillator synthesized in polystyrene matrix

Wieczorek A., Zgardzińska B., Jasińska B., Gorgol M., Bednarski T., Białas P., Czerwiński E., Gajos A., Kamińska D., Kapłon Ł., Kochanowski A., Korcyl G., Kowalski P., Kozik T., Krzemień W., Kubicz E., Niedźwiecki S., Pałka M., Raczyński L., Rudy Z., Rundel O., Sharma N. G., Silarski M., Silarski A., Strzelecki A., Wiślicki W., Zieliński M., Moskal P.

Nukleonika

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2015

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Vol. 60, No. 4, part 1

777--781

EN

The polystyrene doped with 2,5-diphenyloxazole as a primary fluor and 2-(4-styrylphenyl)benzoxazole as a wavelength shifter prepared as a plastic scintillator was investigated using positronium probe in wide range of temperatures from 123 to 423 K. Three structural transitions at 260, 283, and 370 K were found in the material. In the o-Ps intensity dependence on temperature, the significant hysteresis is observed. Heated to 370 K, the material exhibits the o-Ps intensity variations in time.

8

Evaluation of Emotiv EEG neuroheadset

Wójcik G. M., Wierzgała P., Gajos A.

Bio-Algorithms and Med-Systems

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2015

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Vol. 11, no. 4

211--215

EN

Electroencephalography (EEG) has become more popular, and as a result, the market grows with new EEG products. The new EEG solutions offer higher mobility, easier application, and lower price. One of such devices that recently became popular is Emotiv EEG. It has been already tested in various applications concerning brain-computer interfaces, neuromarketing, language processing, and detection of the P-300 component, with a general result that it is capable of recording satisfying research data. However, no one has tested and described its usefulness in long-term research. This article presents experience from using Emotiv EEG in two research projects that involved 39 subjects for 22 sessions. Emotiv EEG has significant technical issues concerning the quality of its screw threads. Two complete and successful solutions to this problem are described.

9

Electroencephalographic detection of synesthesia

Gajos A., Wójcik G. M.

Annales Universitatis Mariae Curie-Skłodowska. Sectio AI, Informatica

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2014

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Vol. 14, no. 3

43--51

EN

In this paper the research on a person declaring synesthetic abilities will be presented. According to the current state of knowledge synesthesia activates additional cortical fields in the brain which can be found in the EEG. The research was conducted using an EGI-EEG system (Electrical Geodesic Inc., Eugene, Oregon, USA) with the GeoSource software. GeoSource is a tool that implements the algorithms LAURA, LORETA and sLORETA. Using these algorithms for EEG analysis we can determine where in the brain the source of activity is. The authors will try to answer the question whether the use of these tools can prove the occurrence of synesthesia.

10

Usefulness of EGI EEG system in brain computer interface research

Wójcik G. M., Mikołajewska E., Mikołajewski D., Wierzgała P., Gajos A., Smolira M.

Bio-Algorithms and Med-Systems

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2013

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Vol. 9, no. 2

73--79

EN

Despite the quick development of medicine and associated medical technology, there are still many patients with very severe neurological deficits who need far more sophisticated solutions, such as brain computer interfaces (BCIs). Our research aims at becoming familiar with BCI technology and the assessment of the possibilities of selected subjects in the area of P300-based BCI. An indirect aim is a discussion on the procedures of patient preparation for BCI installation, possible threats and limitations. Our research presents one of the possible efforts towards better documentation of investigating neural correlates of brain processing.