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1 Bulletin of the Polish Academy of Sciences. Technical Sciences

1 2005

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Simulation of [delta]-phage DNA in microchannels using dissipative particle dynamics

Symeonidis V., Karniadakis G.E., Caswell B.

Bulletin of the Polish Academy of Sciences. Technical Sciences

2005

Vol. 53, nr 4

395-403

Dissipative Particle Dynamics (DPD) is a simulation method at mesoscopic sca1es that bridges the gap between molecular dynamics and continuum hydrodynamics. It call simulate efficiently complex liquids and dense suspensions using only a few thousands of virtual particle s and at speed-up factors of more than one hundred thousands compared to Molecular Dynamics. Lowe's approach provides a powerful alternative to the usual DPD integrating schemes. Here, we demonstrate the details and potential of Lowe's scheme. We compute viscosity, , diffusivity and Schmidt number values and we present comparison of wormlike chain model s under shear with experimental and Brownian I Dynamics results for A-phage DNA.