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Content available remote A New Graph Theoretic Approach for Protein Threading
EN
In this paper, we develop a novel graph theoretic approach for protein threading. In order to perform the protein sequence-structure alignment in threading both efficiently and accurately, we develop a graph model to describe the tertiary structure of a protein family and the alignment between a sequence and a family can be efficiently computed with a dynamic programming algorithm when the tree width of the graph model is a small integer. Our experiments show that this new approach is significantly faster than existing tools for threading and can achieve comparable prediction accuracy.
EN
Quick and accurate estimation of population density in large scale is required in both scientific studies and wildlife management programs. However, effective estimation of small mammal abundance is usually difficult and timeconsuming due to the body size and wide distribution of these animals. To test the efficiency of different methods in assessing small mammal densities, population dynamics of plateau pikas (Ochotona curzoniae, Hodgson) were studied from April 2005 to August 2009 in alpine grassland (Kobresia humilis) at a height of of 3846 m a.s.l. We compared the precision of walked transects method with mark-recapture method using Efford's maximum likelihood spatial estimator (ML). Significant positive correlation was found between walked transects and Efford's ML estimator (r[^2] = 0.58, P <0.001). The densities calculated with walked transects were about twice lower than those obtained using the mark-recapture method over the study period (i.e., summer). Nevertheless, the walked transects method remains useful for relative density estimation. Hence, the walked transects method is recommended for use as an index of relative density in large-scale assessment in alpine grassland where most small mammals are active and easily detected in an open habitat.
3
Content available remote Propagation of a four-beamlets laser array through an apertured optical system
EN
By expanding the hard-aperture function into a finite sum of complex Gaussian functions, an analytical formula for a four-beamlets laser array propagating through an apertured ABCD optical system is derived based on the generalized Collins formula. As a numerical example, the on-axis irradiance of a four-beamlets laser array focused by a squarely apertured bifocal thin lens is studied, and it is found that the focused irradiance is closely related to the parameters of the optical system and the laser array. Our formula provides a convenient way for studying the paraxial propagation of a four-beamlets laser array through an apertured ABCD optical system.
EN
How to improve the quality of output beam of phase conjungation cavity is a problem. In this paper, the output characteristic of compound phase-conjugate resonator with stimulated Brillouin scattering (SBS) cell was reported. The experimental results indicated it has high output energy and excellent stability. The output energy of the single pulse can reach 90 mJ, and the width of it is about 25ns. The results of pulse widths, output energies and beam profiles were given.
EN
In this paper, we report on a colliding-enhanced cavity. The fluctuation of output energy and divergence angle are in accordance with primary resonator. The results of output energy and fluctuation under different conditions are given
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