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Finite state automata built on DNA

Nowak K., Plucienniczak A.

Biocybernetics and Biomedical Engineering

2008

Vol. 28, no. 4

3-19

This paper describes a non-deterministic finite-state automaton based on DNA strands. The automaton uses massive parallel processing offered by molecular approach for computation and exhibits a number of advantages over traditional electronic implementations. This device is used to analyze DNA molecules, whether they are described by specified regular expression. Presented ideas are confirmed by experiment performed in a genetic engineering laboratory.