In this article improvements introduced into GENOME: A rapid coalescent-based whole genome simulator were presented. Implemented modifications allowed for obtainment of significant speed up of the process of results obtainmenvol.
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W artykule przedstawiono modyfikacje wprowadzone do kodu aplikacji GENOME: A rapid coalescent-based whole genome simulator. Wprowadzone zmiany mają na celu skrócenie czasu oczekiwania na wyniki dzięki wykorzystaniu wielowątkowości.
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In a previous paper, we developed an algebraic theory about threads and multi-threading based on the assumption that a deterministic interleaving strategy determines how threads are interleaved. The theory includes interleaving operators for a number of plausible deterministic interleaving strategies. The interleaving of different threads constitutes a multi-thread. Several multi-threads may exist concurrently on a single host in a network, several host behaviors may exist concurrently in a single network on the internet, etc. In the current paper, we assume that the above-mentioned kind of interleaving is also present at these other levels. We extend the theory developed so far with features to cover the multi-level case. We use the resulting theory to develop a simplified formal representation schema of systems that consist of several multi-threaded programs on various hosts in different networks. We also investigate the connections of the resulting theory with the algebraic theory of processes known as ACP.
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