The epilimnetic and metalimnetic phytoplankton assemblages were compared in two mesotrophic lakes (L. Hańcza and L. Dejguny, northeastern Poland) and a “metalimnetic niche” is described. Phytoplankton analysis conducted during July and August 2006, 2007, and 2008 indicated that the total phytoplankton biomass in both lakes was relatively small (from 0.6 to 5.2 mg dm-3), with maximum values mainly occurring in the metalimnion. The lowest number of species and diversity indices values were usually observed in the metalimnetic layers. Lake Hańcza was dominated by diatoms (e.g. Cyclotella spp.) whereas Lake Dejguny was mainly dominated by cyanoprokaryotes (e.g. Planktothrix agardhii), with a distinct predominance of diatoms (e.g. Tabellaria flocculosa) in 2007. The common features of the phytoplankton assemblages in both lakes were a tolerance to nutrient and light deficiencies. A cluster analysis of the taxonomic patterns indicated large dissimilarities between the lakes. The phytoplankton assemblages developed under the influence of seasonal conditions, especially in Lake Hańcza. The distinction between metalimnetic and epilimnetic phytoplankton assemblages only appeared in Lake Dejguny.
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