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1 2010

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Nitano - novel inter/intramolecular colocation calculator

Kuśka J., Leluk J., Lesyng B.

Bio-Algorithms and Med-Systems

2010

Vol. 6, no. 12

91--97

Nitano is a stand-alone Windows application. The main purpose of this software is to calculate the intra- or intermolecular residue colocations. A PDB file is used as input file. The application is to detect and analyse the intramolecular contacts as well as the contacts between residues from two separate chains/molecules (see Fig. 2). Nitano can be used for study the proteins and nucleic acids. The output files contain names, numbers and distances between the atoms that reveal collocation. The application gives two types of maps that show the structure on a two-dimensional image. Nitano allows to perform basic statistical analysis of obtained results. This application is a useful tool supporting the work of drug designers in creating more specific ligands. The application is freely available for educational and academic purposes at: http://www.bioware.republika.pl. Nitano is a user friendly application and does not require any advanced course to be applied for any kind of analysis.