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AutoCovNet: Unsupervised feature learning using autoencoder and feature merging for detection of COVID-19 from chest X-ray images

Rashid Nayeeb, Hossain Md Adnan Faisal, Ali Mohammad, Islam Sukanya Mumtahina, Mahmud Tanvir, Fattah Shaikh Anowarul

Biocybernetics and Biomedical Engineering

2021

Vol. 41, no. 4

1685--1701

With the onset of the COVID-19 pandemic, the automated diagnosis has become one of the most trending topics of research for faster mass screening. Deep learning-based approaches have been established as the most promising methods in this regard. However, the limitation of the labeled data is the main bottleneck of the data-hungry deep learning methods. In this paper, a two-stage deep CNN based scheme is proposed to detect COVID-19 from chest X-ray images for achieving optimum performance with limited training images. In the first stage, an encoder-decoder based autoencoder network is proposed, trained on chest X-ray images in an unsupervised manner, and the network learns to reconstruct the X-ray images. An encoder-merging network is proposed for the second stage that consists of different layers of the encoder model followed by a merging network. Here the encoder model is initialized with the weights learned on the first stage and the outputs from different layers of the encoder model are used effectively by being connected to a proposed merging network. An intelligent feature merging scheme is introduced in the proposed merging network. Finally, the encoder-merging network is trained for feature extraction of the X-ray images in a supervised manner and resulting features are used in the classification layers of the proposed architecture. Considering the final classification task, an EfficientNet-B4 network is utilized in both stages. An end to end training is performed for datasets containing classes: COVID-19, Normal, Bacterial Pneumonia, Viral Pneumonia. The proposed method offers very satisfactory performances compared to the state of the art methods and achieves an accuracy of 90:13% on the 4-class, 96:45% on a 3-class, and 99:39% on 2-class classification.

Texture analysis in perfusion images of prostate cancer-A case study

Śmietański J., Tadeusiewicz R., Łuczyńska E.

International Journal of Applied Mathematics and Computer Science

2010

Vol. 20, no 1

149-156

The analysis of prostate images is one of the most complex tasks in medical images interpretation. It is sometimes very difficult to detect early prostate cancer using currently available diagnostic methods. But the examination based on perfusion computed tomography (p-CT) may avoid such problems even in particularly difficult cases. However, the lack of computational methods useful in the interpretation of perfusion prostate images makes it unreliable because the diagnosis depends mainly on the doctor's individual opinion and experience. In this paper some methods of automatic analysis of prostate perfusion tomographic images are presented and discussed. Some of the presented methods are adopted from papers of other researchers, and some are elaborated by the authors. This presentation of the method and algorithms is important, but it is not the master scope of the paper. The main purpose of this study is computational (deterministic and independent) verification of the usefulness of the p-CT technique in a specific case. It shows that it is possible to find computationally attainable properties of p-CT images which allow pointing out the cancerous lesion and can be used in computer aided medical diagnosis.