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Segmentation of pulmonary vascular tree from 3D CT thorax scans

Fabijańska A.

Biocybernetics and Biomedical Engineering

2015

Vol. 35, no. 2

106--119

This paper considers the problem of pulmonary vessels identification in thoracic 3D CT scans. In particular, the method for pulmonary vascular tree segmentation is introduced. The main idea behind the introduced method is to extract both thoracic trees together (i.e. the vascular tree and the airway tree) and then remove airway walls. Therefore, firstly segmentation of vessels and airway walls is performed using 3D region growing where the growth of the region is guided and constrained by results of random walk segmentation applied to consecutive CT slices. In particular, results of random walk segmentation of one slice are used to determine seeds for random walk segmentation of the following slice. Next step is airway tree segmentation using 3D region growing algorithm guided and constrained by the morphological gradient. Finally, morphological processing is applied in order to extend airway lumen onto airway walls and remove the overlapping regions. The main steps of the proposed approach are described in detail. Results of pulmonary vascular tree segmentation from example thoracic volumetric CT datasets provided by the introduced approach are presented and discussed. Based on a manually selected and radiologist's verified ground truth pixels and the resulting quality measures it can be concluded, that the average accuracy of the introduced approach is about 90%.