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Genetic variability of the populations of Zwackhia viridis (Ach.) Poetsch & Schied (Lecanographaceae, Lichenized Ascomycetes) in the Eastern Poland: geographical versus habitat distance

Wieczorek A., Achrem M., Mitka J. R., Rogalski M., Werczyńska K.

Polish Journal of Ecology

2014

Vol. 62, nr 2

253--261

Zwackhia viridis is a crustose lichen being found in forests throughout Poland. It belongs to rare species being labelled primeval forest lichens which are associated with large forest complexes. The eastern populations of Z. viridis were examined using RAPD technique in order to check whether geographic distance affects genetic diversity of the populations under study. The analysis of seven populations of that species showed large intraspecific diversity. The greatest genetic similarity occurred between populations from the north-eastern area of the country, about 300 km away from each other. In dendrograms, only these populations have simple matching distance greater than 50%.

Assessment of genetic diversity of Tilia rubra DC. by RAPD analysis in the Hyrcanian forests, north of Iran

Hosseinzadeh Colagar A., Yusefi M., Zarei M., Yousefzadeh H.

Polish Journal of Ecology

2013

Vol. 61, nr 2

341--348

Genetic variability and differentiation of six populations of Tilia rubra from Hyrcanian forests of the north of Iran were analyzed using random ampliﬁed polymorphic DNA (RAPD) markers. Seven primers pairs used to study six populations, in six localities located in at different altitude (250–2500 m a.s.l) but within the distance 50 km, provided 70 reliable bands, of which 29 (41.4%) were polymorphic. The average population diversity using the Shannon’s index (I) was 0.22 and ranged from 0.22 for Bandbon population to 0.08 for the Salahedinkola population. The mean heterozygosity varied from 0.013 to 0.06 within the populations of T. rubra. The AMOVA analysis showed a significant genetic differentiation within populations and 97% of the total variation occurred within populations and only 3% occurred among populations. Cluster analysis using the UPGMA method grouped all individuals into four clusters. The results did not correspond with the populations origin. The low inter-population differentiation and the lack of significant correlation between geographic and genetic distances suggest intensive gene flow among populations of Tilia rubra.

Molecular Diagnostic of Streptococcus thermophilus

Vanatkova Z., Okenkova E., Bunkova L., Drab V., Hrabe J.

Ecological Chemistry and Engineering. A

2009

Vol. 16, nr 12

1627-1635

Streptococcus thermophilus is one of the most important lactic acid bacteria in the dairy industry. Despite the wide use of Streptococcus thermophilus in the industry, data on the phenotypic and genetic strain variations within the species are still limited. Genetic techniques are very useful for molecular discrimination of complex mixtures of starter and probiotic cultures in research laboratories. Detection and identification of various lactic acid bacteria species with rapid methods is often important for quality control of dairy products. This work deals with characterization and differentiation of strains Streptococcus thermophilus by PCR, RAPD and SDS-PAGE techniques. Fifteen strains of Streptococcus thermophilus from Czech Collection of Dairy Microorganisms (CCDM) and a strain of Streptococcus thermophilus from Czech Collection of Microorganisms (CCM) were used. Particular strains were confirmed with primer set THI/THII by PCR method. Consequently, their identities were examined by RAPD and SDS-PAGE techniques. Whereas, primers OPP-7 and RAPD-4, RAPD were used. It can be claimed that mentioned methods are good means for identification and characterization of streptococci.

Streptococcus thermofilus jest jednym z najważniejszych przedstawicieli bakterii kwasu mlekowego. Pomimo powszechnego zastosowania tego gatunku w przemyśle mleczarskim nadal nieliczne są dane na temat jego zróżnicowania fenotypowego i genetycznego Streptococcus thermofilus. Szybka identyfikacja różnych gatunków bakterii kwasu mlekowego ma duże znaczenie dla kontroli jakości produktów mleczarskich. Niniejsza praca dotyczy charakterystyk i różnic występujących między różnymi liniami Streptococcus thermofilus. Badania zostały przeprowadzone przy użyciu technik PCR, RAPD i SDS-PAGE. Do badań użyto 15 linii Streptococcus thermofilus z Czeskiego Zbioru Mikroorganizmów Mleczarskich oraz jednej linii Streptococcus thermofilus z Czeskiego Zbioru Mikroorganizmów. Dokonano porównania primerów THI/THII między poszczególnymi liniami bakterii za pomocą techniki PCR. Następnie próbki były badane i identyfikowane przy użyciu technik RAPD i SDS-PAGE. Natomiast primery OPP-7 i RAPD-4 zbadano techniką RAPD. Badania wykazały, że zastosowane techniki mogą być skutecznie wykorzystywane do identyfikacji i charakterystyki bakterii z rodzaju Streptococcus.