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EN
With global life expectancy rising every year, ageing-associated diseases are becoming an increasingly important problem. Very often, successful treatment relies on early diagnosis. In this work, the issue of Parkinson's disease (PD) diagnostics is tackled. It is particularly important, as there are no certain antemortem methods of diagnosing PD - meaning that the presence of the disease can only be confirmed after the patient's death. In our work, we propose a non-invasive approach for classification of raw speech recordings for PD recognition using deep learning models. The core of the method is an audio classifier using knowledge transfer from a pretrained natural language model, namely wav2vec 2.0. The model was tested on a group of 38 PD patients and 10 healthy persons above the age of 50. A dataset of speech recordings acquired using a smartphone recorder was constructed and the recordings were labelled as PD/non-PD with the severity of the disease additionally rated using Hoehn-Yahr scale. We then benchmarked the classification performance against baseline methods. Additionally, we show an assessment of human-level performance with neurology professionals.
EN
Parkinson’s disease is associated with memory loss, anxiety, and depression in the brain. Problems such as poor balance and difficulty during walking can be observed in addition to symptoms of impaired posture and rigidity. The field dedicated to making computers capable of learning autonomously, without having to be explicitly programmed, is known as machine learning. An approach to the diagnosis of Parkinson’s disease, which is based on artificial intelligence, is discussed in this article. The input for this system is provided through photographic examples of Parkinson’s disease patient handwriting. Received photos are preprocessed using the relief feature option to begin the process. This is helpful in the process of selecting characteristics for the identification of Parkinson’s disease. After that, the linear discriminant analysis (LDA) algorithm is employed to reduce the dimensions, bringing down the total number of dimensions that are present in the input data. The photos are then classified via radial basis function-support vector machine (SVM-RBF), k-nearest neighbors (KNN), and naive Bayes algorithms, respectively.
EN
This study aimed to differentiate individuals with Parkinson's disease (PD) from those with other neurological disorders (ND) by analyzing voice samples, considering the association between voice disorders and PD. Voice samples were collected from 76 participants using different recording devices and conditions, with participants instructed to sustain the vowel /a/ comfortably. PRAAT software was employed to extract features including autocorrelation (AC), cross-correlation (CC), and Mel frequency cepstral coefficients (MFCC) from the voice samples. Principal component analysis (PCA) was utilized to reduce the dimensionality of the features. Classification Tree (CT), Logistic Regression, Naive Bayes (NB), Support Vector Machines (SVM), and Ensemble methods were employed as supervised machine learning techniques for classification. Each method provided distinct strengths and characteristics, facilitating a comprehensive evaluation of their effectiveness in distinguishing PD patients from individuals with other neurological disorders. The Naive Bayes kernel, using seven PCA-derived components, achieved the highest accuracy rate of 86.84% among the tested classification methods. It is worth noting that classifier performance may vary based on the dataset and specific characteristics of the voice samples. In conclusion, this study demonstrated the potential of voice analysis as a diagnostic tool for distinguishing PD patients from individuals with other neurological disorders. By employing a variety of voice analysis techniques and utilizing different machine learning algorithms, including Classification Tree, Logistic Regression, Naive Bayes, Support Vector Machines, and Ensemble methods, a notable accuracy rate was attained. However, further research and validation using larger datasets are required to consolidate and generalize these findings for future clinical applications.
PL
Przedstawione badanie miało na celu różnicowanie osób z chorobą Parkinsona (PD) od osób z innymi zaburzeniami neurologicznymi poprzez analizę próbek głosowych, biorąc pod uwagę związek między zaburzeniami głosu a PD. Próbki głosowe zostały zebrane od 76 uczestników przy użyciu różnych urządzeń i warunków nagrywania, a uczestnicy byli instruowani, aby wydłużyć samogłoskę /a/ w wygodnym tempie. Oprogramowanie PRAAT zostało zastosowane do ekstrakcji cech, takich jak autokorelacja (AC), krzyżowa korelacja (CC) i współczynniki cepstralne Mel (MFCC) z próbek głosowych. Analiza składowych głównych (PCA) została wykorzystana w celu zmniejszenia wymiarowości cech. Jako techniki nadzorowanego uczenia maszynowego wykorzystano drzewa decyzyjne (CT), regresję logistyczną, naiwny klasyfikator Bayesa (NB), maszyny wektorów nośnych (SVM) oraz metody zespołowe. Każda z tych metod posiadała swoje unikalne mocne strony i charakterystyki, umożliwiając kompleksową ocenę ich skuteczności w rozróżnianiu pacjentów z PD od osób z innymi zaburzeniami neurologicznymi. Naiwny klasyfikator Bayesa, wykorzystujący siedem składowych PCA, osiągnął najwyższy wskaźnik dokładności na poziomie 86,84% wśród przetestowanych metod klasyfikacji. Należy jednak zauważyć, że wydajność klasyfikatora może się różnić w zależności od zbioru danych i konkretnych cech próbek głosowych. Podsumowując, to badanie wykazało potencjał analizy głosu jako narzędzia diagnostycznego do rozróżniania pacjentów z PD od osób z innymi zaburzeniami neurologicznymi. Poprzez zastosowanie różnych technik analizy głosu i wykorzystanie różnych algorytmów uczenia maszynowego, takich jak drzewa decyzyjne, regresja logistyczna, naiwny klasyfikator Bayesa, maszyny wektorów nośnych i metody zespołowe, osiągnięto znaczący poziom dokładności. Niemniej jednak, konieczne są dalsze badania i walidacja na większych zbiorach danych w celu skonsolidowania i uogólnienia tych wyników dla przyszłych zastosowań klinicznych.
EN
Identifying and assessing Parkinson's disease in its early stages is critical to effectively monitoring the disease's progression. Methodologies based on machine learning enhanced speech analysis are gaining popularity as the potential of this field is revealed. Acoustic features, in particular, are used in a variety of algorithms for machine learning and could serve as indicators of the general health of subjects' voices. In this research paper, a novel method is introduced for the automated detection of Parkinson's disease through speech signal analysis, a support vector machines classifier (SVM) and an Artificial Neural Network (ANN) are used to evaluate and classify the data based on two acoustic features: Bark Frequency Cepstral Coefficients (BFCC) and Mel Frequency Cepstral Coefficients (MFCC). These features are extracted from the denoised signals using Empirical Mode Decomposition (EMD). The most relevant results obtained for a dataset of 38 participants are by the BFCC coefficients with an accuracy up to 92.10%. These results confirm that EMD-BFCC-SVM method can contribute to the detection of Parkinson's disease.
EN
Finger tapping is one of the standard tests for Parkinson's disease diagnosis performed to assess the motor function of patients' upper limbs. In clinical practice, the assessment of the patient's ability to perform the test is carried out visually and largely depends on the experience of clinicians. This article presents the results of research devoted to the objectification of this test. The methodology was based on the proposed measurement method consisting in frame processing of the video stream recorded during the test to determine the time series representing the distance between the index finger and the thumb. Analysis of the resulting signals was carried out in order to determine the characteristic features that were then used in the process of distinguishing patients with Parkinson's disease from healthy cases using methods of machine learning. The research was conducted with the participation of 21 patients with Parkinson's disease and 21 healthy subjects. The results indicate that it is possible to obtain the sensitivity and specificity of the proposed method at the level of approx. 80 %. However, the patients were in the so-called ON phase when symptoms are reduced due to medication, which was a much greater challenge compared to analyzing signals with clearly visible symptoms as reported in related works.
EN
In our aging culture, neurodegenerative disorders like Parkinson's disease (PD) are among the most serious health issues. It is a neurological condition that has social and economic effects on individuals. It happens because the brain's dopamine-producing cells are unable to produce enough of the chemical to support the body's motor functions. The main symptoms of this illness are eyesight, excretion activity, speech, and mobility issues, followed by depression, anxiety, sleep issues, and panic attacks. The main aim of this research is to develop a workable clinical decision-making framework that aids the physician in diagnosing patients with PD influence. In this research, the authors propose a technique to classify Parkinson’s disease by MRI brain images. Initially, the input data is normalized using the min-max normalization method, and then noise is removed from the input images using a median filter. The Binary Dragonfly algorithm is then used to select features. In addition, the Dense-UNet technique is used to segment the diseased part from brain MRI images. The disease is then classified as Parkinson's disease or health control using the Deep Residual Convolutional Neural Network (DRCNN) technique along with the Enhanced Whale Optimization Algorithm (EWOA) to achieve better classification accuracy. In this work, the Parkinson's Progression Marker Initiative (PPMI) public dataset for Parkinson's MRI images is used. Indicators of accuracy, sensitivity, specificity and precision are used with manually collected data to evaluate the effectiveness of the proposed methodology.
EN
Engineering support in the field of recognizing Parkinson's disease against the background of other diseases, its progression and monitoring the effectiveness of drugs is currently widely implementedas part of work devoted to the use of recording and analysis devices equipped with sensors of movement parameters attached to the patient's body, e.g. accelerometers and gyroscopes. This material touches on an alternative approach, in which the concept of using techniques for processing selected image data obtained during a clinical examination evaluating a patient using the unified UPDRS number scale is proposed. The research was conducted on a material that corresponded to selected components of the scale and included images of faces recorded in the visible light range and images of the outer surfaces of the hand recorded with a thermal imaging camera.This was aimed at assessing the possibility of differentiating personsin terms of detecting Parkinson's disease on the basis of registered modalities. Thus, tasks aimed at developing characteristics important in the binary classification process were carried out. The assessment of features was made in a modality-dependent manner based on available tools in the field of statistics and machine learning.
PL
Wsparcie inżynierskie w zakresie rozpoznawania choroby Parkinsona na tle innych chorób, jej progresji oraz monitorowania skuteczności leków jest obecnie szeroko realizowane w ramach prac poświęconych wykorzystaniu urządzeń rejestrujących i analizujących wyposażonych w sensory parametrów ruchu przymocowanych do ciała pacjenta, np. akcelerometry i żyroskopy. W prezentowanej pracy przedstawiono alternatywne podejście, w którym proponuje się koncepcję wykorzystania technik przetwarzania wybranych danych obrazowych uzyskanych podczas badania klinicznego oceniającego pacjenta za pomocą ujednoliconej skali liczbowej UPDRS. Badania przeprowadzono na materiale, który odpowiadał wybranym składowym skali i obejmował obrazy twarzy utrwalone w zakresie światła widzialnego oraz obrazy zewnętrznych powierzchni dłoni rejestrowane kamerą termowizyjną. Wykonane badania miały na celu ocenę możliwości różnicowania osób pod względem wykrywania choroby Parkinsona na podstawie zarejestrowanych metod. W ten sposób zrealizowano zadania mające na celu opracowanie cech istotnych w procesie klasyfikacji binarnej. Ocena cech została dokonana w sposób zależny od modalności w oparciu o dostępne narzędzia z zakresu statystyki i uczenia maszynowego.
EN
The diagnosis of Parkinson’s disease (PD) is important in neurological pathology for appropriate medical therapy. Algorithms based on decision tree induction (DTI) have been widely used for diagnosing PD through biomedical voice disorders. However, DTI for PD diagnosis is based on a greedy search algorithm which causes overfitting and inferior solutions. This paper improved the performance of DTI using evolutionary-based genetic algorithms. The goal was to combine evolutionary techniques, namely, a genetic algorithm (GA) and genetic programming (GP), with a decision tree algorithm (J48) to improve the classification performance. The developed model was applied to a real biomedical dataset for the diagnosis of PD. The results showed that the accuracy of the J48, was improved from 80.51% to 89.23% and to 90.76% using the GA and GP, respectively.
EN
More than 90% of patients with Parkinson’s disease suffer from hypokinetic dysarthria. This paper proposes a novel end-to-end deep learning model for Parkinson’s disease detection from speech signals. The proposed model extracts time series dynamic features using time-distributed two-dimensional convolutional neural networks (2D-CNNs), and then captures the dependencies between these time series using a one-dimensional CNN (1D-CNN). The performance of the proposed model was verified on two databases. On Database-1, the proposed model outperformed expert features-based machine learning models and achieved promising results, showing accuracies of 81.6% on the speech task of sustained vowel /a/ and 75.3% on the speech task of reading a short sentence (/si shi si zhi shi shi zi/) in Chinese. On Database-2, the proposed model was assessed on multiple sound types, including vowels, words, and sentences. An accuracy of up to 92% was obtained on the speech tasks, which included reading simple (/loslibros/) and complex (/viste/) sentences in Spanish. By visualizing the features generated by the model, it was found that the learned time series dynamic features are able to capture the characteristics of the reduced overall frequency range and reduced variability of Parkinson’s disease sounds, which are important clinical evidence for detecting Parkinson’s disease patients. The results also suggest that the low-frequency region of the Mel-spectrogram is more influential and important than the high-frequency region for Parkinson’s disease detection from speech.
10
Content available remote Diagnosis of Parkinson’s disease based on SHAP value feature selection
EN
To address the problem of high feature dimensionality of Parkinson’s disease medical data, this paper introduces SHapley Additive exPlanations (SHAP) value for feature selection of Parkinson’s disease medical dataset. This paper combines SHAP value with four classifiers, namely deep forest (gcForest), extreme gradient boosting (XGBoost), light gradient boosting machine (LightGBM) and random forest (RF), respectively. Then this paper applies them to Parkinson’s disease diagnosis. First, the classifier is used to calculate the magnitude of contribution of SHAP value to the features, then the features with significant contribution in the classification task are selected, and then the data after feature selection is used as input to classify the Parkinson’s disease dataset for diagnosis using the classifier. The experimental results show that compared to Fscore, analysis of variance (Anova-F) and mutual information (MI) feature selection methods, the four models based on SHAP-value feature selection achieved good classification results. The SHAP-gcForest model combined with gcForest achieves classification accuracy of 91.78% and F1-score of 0.945 when 150 features are selected. The SHAP-LightGBM model combined with LightGBM achieves classification accuracy and F1-score of 91.62% and 0.945 when 50 features are selected, respectively. The classification effectiveness is second only to the SHAP-gcForest model, but the SHAP-LightGBM model is more computationally efficient than the SHAP-gcForest model. Finally, the effectiveness of the proposed method is verified by comparing it with the results of existing literature. The findings demonstrate that machine learning with SHAP value feature selection method has good classification performance in the diagnosis of Parkinson’s disease, and provides a reference for physicians in the diagnosis and prevention of Parkinson’s disease.
EN
Parkinson’s disease (PD) is the second most common neurological disorder in the world. Nowadays, it is estimated that it affects from 2% to 3% of the global population over 65 years old. In clinical environments, a spiral drawing task is performed to help to obtain the disease’s diagnosis. The spiral trajectory differs between people with PD and healthy ones. This paper aims to analyze differences between handmade drawings of PD patients and healthy subjects by applying the SqueezeNet convolutional neural network (CNN) model as a feature extractor, and a support vector machine (SVM) as a classifier. The dataset used for training and testing consists of 514 handwritten draws of Archimedes’ spiral images derived from heterogeneous sources (digital and paper-based), from which 296 correspond to PD patients and 218 to healthy subjects. To extract features using the proposed CNN, a model is trained and 20% of its data is used for testing. Feature extraction results in 512 features, which are used for SVM training and testing, while the performance is compared with that of other machine learning classifiers such as a Gaussian naive Bayes (GNB) classifier (82.61%) and a random forest (RF) (87.38%). The proposed method displays an accuracy of 91.26%, which represents an improvement when compared to pure CNN-based models such as SqueezeNet (85.29%), VGG11 (87.25%), and ResNet (89.22%).
EN
Voice acoustic analysis can be a valuable and objective tool supporting the diagnosis of many neurodegenerative diseases, especially in times of distant medical examination during the pandemic. The article compares the application of selected signal processing methods and machine learning algorithms for the taxonomy of acquired speech signals representing the vowel a with prolonged phonation in patients with Parkinson’s disease and healthy subjects. The study was conducted using three different feature engineering techniques for the generation of speech signal features as well as the deep learning approach based on the processing of images involving spectrograms of different time and frequency resolutions. The research utilized real recordings acquired in the Department of Neurology at the Medical University of Warsaw, Poland. The discriminatory ability of feature vectors was evaluated using the SVM technique. The spectrograms were processed by the popular AlexNet convolutional neural network adopted to the binary classification task according to the strategy of transfer learning. The results of numerical experiments have shown different efficiencies of the examined approaches; however, the sensitivity of the best test based on the selected features proposed with respect to biological grounds of voice articulation reached the value of 97% with the specificity no worse than 93%. The results could be further slightly improved thanks to the combination of the selected deep learning and feature engineering algorithms in one stacked ensemble model.
EN
Successful deep brain stimulation surgery for Parkinson’s disease (PD) patients hinges on accurate clustering of the functional regions along the electrode insertion trajectory. Microelectrode recording (MER) is employed as a substantial tool for neuro-navigation and localizing the optimal target, such as the subthalamic nucleus (STN), intraoperatively. MER signals deliver a framework to reveal the underlying characteristics of STN. The motivation behind this work is to explore the application of Higher-order statistics and spectra (HOS) for an automated delineation of the neurophysiological borders of STN using MER signals. Database collected from 21 PD patients were used. Two HOS methods (Bispectrum and cumulant) were exploited to probe non-Gaussian properties of STN region. This is followed by utilizing classifiers, namely K-nearest neighbor, decision tree, Boosting and support vector machine (SVM), to choose the superior classifier. Comparison of the performance achieved via HOS alongside the state-of-the-art techniques shows that the proposed features are better suited for identifying STN borders and achieve higher results. Average classification accuracy, sensitivity, specificity, area under the curve and Youden’s J statistics of 94.81%, 96.73%, 92.15%, 0.9444% and 0.8888, respectively, were yielded using SVM with 8 bispectrum and 241 cumulants features. The proposed model can aid the neurosurgeon in STN detection.
EN
Deep brain stimulation (DBS) of the subthalamic nucleus (STN) is a well-established interventional treatment for improving motor symptoms of patients suffering from Parkinson’s disease (PD). While STN is originally localized using imaging modalities, additional intraoperative guidance such as microelectrode recording (MER) is crucial to refine the final electrode trajectory. Analysis of MER by an experienced neurophysiologist maintains good clinical outcomes, although the procedure requires long duration and jeopardizes the safety of the surgery. Lately, local field potentials (LFP) investigation has inspired the emergence of adaptive DBS and revealed beneficial perception of PD mechanisms. Several studies confronting LFP analysis to detect the anatomical borders of STN, have focused on handcrafted feature engineering, which does not certainly capture delicate differences in LFP. This study gauges the ability of deep learning to exhibit valuable insight into the electrophysiological neural rhythms of STN using LFP. A recurrent convolutional neural network (CNN) strategy is presented, where local features are extracted from LFP signals via CNN, followed by recurrent layers to aggregate the best features for classification. The proposed model outperformed the state-of-the-art techniques, yielding highest average accuracy of 96.79%. This is the first study on the analysis of LFP signals to localize STN using deep recurrent CNN. The developed model has the potential to extract high level biomarkers regarding STN region, which would boost the neurosurgeon’s confidence in adjusting the trajectory intraoperatively for optimal lead implantation. LFP is a robust guidance tool and could be an alternative solution to the current scenario using MER.
EN
One of the most frequently diagnosed neurodegenerative disorders, along with Alzheimer’s disease, is Parkinson’s disease. It is a slowly progressing disease of the central nervous system that affects parts of the brain which are responsible for one’s motor functions. Despite the frequency of its occurrence among the elderly population, there has not yet been established a universal approach towards its certain diagnostics ante mortem. The study presents a pilot experiment regarding the assessment of the usefulness of simultaneous processing and analysis of speech signal and hand tremor accelerations for patient’s screening and monitoring of the progress in healing, using the data acquired with a mid-range Android smartphone. During the study, a mobile device of this kind was used to record the patients of the Department of Neurology, University Hospital of the Jagiellonian University in Kraków and a control group of healthy persons over the age of 50. The samples were then analysed and an attempt towards classification was made using statistical methods and machine learning techniques (PCA, SVM, LDA). It was shown that even for a limited population, the classifier reaches about 85% accuracy. Another topic discussed in the study is the possibility of implementing a fully automated mobile system for the monitoring of the disease’s progression. Propositions of further research were also drawn.
PL
Jednym z najczęściej diagnozowanych zaburzeń neurodegeneracyjnych, obok choroby Alzheimera, jest choroba Parkinsona. To wolno postępująca choroba zwyrodnieniowa ośrodkowego układu nerwowego, która zajmuje obszary mózgu odpowiedzialne za motorykę. Pomimo powszechności choroby wśród osób starszych, do tej pory nie została opisana uniwersalna metoda jej pewnego zdiagnozowania. Praca przedstawia pilotażowe badanie dotyczące określenia przydatności i możliwości wykorzystania metod jednoczesnego przetwarzania i analizy sygnału mowy oraz sygnału przyspieszenia drgań kończyny górnej w kontekście badań przesiewowych lub obiektywnego monitorowania postępu leczenia chorób neurodegeneracyjnych, z wykorzystaniem danych pozyskanych za pomocą średniej klasy smartfonu z systemem Android. W ramach badania wykonano za pomocą urządzenia mobilnego nagrania pacjentów Oddziału Neurologii Szpitala Uniwersyteckiego w Krakowie ze zdiagnozowaną chorobą Parkinsona oraz osób zdrowych powyżej 50 roku życia. Próbki poddano analizie i wstępnej klasyfikacji z wykorzystaniem metod statystycznych oraz technik uczenia maszynowego (PCA, SVM, LDA). Pokazano, że skuteczność klasyfikacji już dla niewielkiej populacji sięga około 85%. W pracy omówiono również możliwość implementacji w pełni automatycznego systemu mobilnego monitorowania przebiegu choroby, a także przedstawiono propozycję dalszych badań w tym kierunku.
EN
The aim of this study was to evaluate the reliability of the novel posturographic procedure and to investigate the relationships between parameters of this procedure and clinical tests. We hypothesised the proposed step initiation procedure to be reliable method of balance and motor disability assessment, especially in patients with neurological deficits. Also, we assumed high significant correlation between parameters of step initiation procedures and clinical tests. Methods: The 35 subjects with idiopathic PD and 35 agedmatched healthy controls participated in this study. The gait initiation was measured using two force platforms. The procedure consisted of three phases: (1) quiet standing on a first platform (2) crossing on the second platform, (3) quiet standing on a second platform. Testing was carried out in four conditions: unperturbed trial, obstacle crossing, step-up and step-down. Results: In the proposed gait initiation procedure, the vCOP, raCOP and rmsCOP showed an excellent reliability (ICC > 0.80). For transit phase, reliability of all variables in all conditions also was excellent (ICC = 0.8–0.9). There were only a few associations between Tinetti scores and posturographic variables in controls, but in PD patients the significant correlations were found between the proposed measures and the UPDRS, Tinetti, FRT, TUG and with the BBS. Conclusions: The proposed gait initiation procedure is reliable and very suitable for the assessment of patients with Parkinson’s disease. It can be used as an objective assessment of the clinical condition and dynamic balance, and help in the designing and programming of the appropriate rehabilitation and treatment.
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