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Unavoidable Sets, Prefix Graphs and Regularity of Circular Splicing Languages

Bonizzoni Paola, De Felice Clelia, Zaccagnino Rocco, Zizza Rosalba

Fundamenta Informaticae

2020

Vol. 171, nr 1-4

81--95

Circular splicing systems are a mathematical model, inspired by a recombinant behaviour of circular DNA. They are defined by a finite alphabet A, an initial set I of circular words, and a set R of rules. A circular splicing language is a language generated by a circular splicing system. An open problem is to characterize regular circular splicing languages and the corresponding circular splicing systems. In this framework an important role is played by unavoidable sets. These sets have been considered in several contexts. In particular, Ehrenfeucht, Haussler and Rozenberg (1983) proved the following generalization of a famous Higman’s theorem: the quasi-order induced by insertions of words from a fixed finite set is a well-quasi-order if and only if the finite set is unavoidable. In this paper we survey the known relations between unavoidable sets and regular circular languages. Motivated by these connections we give an alternative and simpler proof of the Ehrenfeucht, Haussler and Rozenberg result. Our proof is strongly based on a known characterization of unavoidable sets in terms of graphs associated with them.