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Web–based framework for breast cancer classification

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Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
The aim of this work is to create a web-based system that will assist its users in the cancer diagnosis process by means of automatic classification of cytological images obtained during fine needle aspiration biopsy. This paper contains a description of the study on the quality of the various algorithms used for the segmentation and classification of breast cancer malignancy. The object of the study is to classify the degree of malignancy of breast cancer cases from fine needle aspiration biopsy images into one of the two classes of malignancy, high or intermediate. For that purpose we have compared 3 segmentation methods: k-means, fuzzy c-means and watershed, and based on these segmentations we have constructed a 25–element feature vector. The feature vector was introduced as an input to 8 classifiers and their accuracy was checked. The results show that the highest classification accuracy of 89.02 % was recorded for the multilayer perceptron. Fuzzy c–means proved to be the most accurate segmentation algorithm, but at the same time it is the most computationally intensive among the three studied segmentation methods.
Rocznik
Strony
149--162
Opis fizyczny
Bibliogr. 33 poz., rys.
Twórcy
  • Institute of Computer Engineering, Control and Robotics, Wrocław University of Technology, Wybrze˙ze Wyspia´nskiego 27, 50370 Wrocław, Poland
autor
  • Department of Computer Science and Software Engineering, Concordia University, 1455 De Maisonneuve Blvd. West, Montreal, Quebec, Canada H3G 1M8
autor
  • Department of Computer Science and Software Engineering, Concordia University, 1455 De Maisonneuve Blvd. West, Montreal, Quebec, Canada H3G 1M8
autor
  • Department of Computer Science and Software Engineering, Concordia University, 1455 De Maisonneuve Blvd. West, Montreal, Quebec, Canada H3G 1M8
Bibliografia
  • [1] UCI machine learning repository.
  • [2] National Cancer Registry, The Maria Skłodowska – Curie memorial Cancer Center, Department of Epidemiology and Cancer Prevetion, December 2013.
  • [3] TNM breast cancer staging, December 2014.
  • [4] M.N. Ahmed, S.M. Yamany, N. Mohamed, A.A. Farag, and T. Moriarty. A modified fuzzy c-means algorithm for bias field estimation and segmentation of mri data. IEEE Transactions on Medical Imaging, 21:193–199, 2002.
  • [5] J.C. Bezdek. Pattern Recognition with Fuzzy Objective Function Algorithms. Plenum Press, New York, 1981.
  • [6] C.M. Bishop. Pattern Recognition and Machine Learning. Springer, 2006.
  • [7] H.J.G. Bloom and W.W. Richardson. Histological grading and prognosis in breast cancer. BritishJournal of Cancer, 11:359–377, 1957.
  • [8] J.C. Dunn. A fuzzy relative of the isodata process and its use in detecting compact well-separated clusters. Journal of Cybernetics, 3:32–57, 1973.
  • [9] A. Ethem. Introduction to Machine Learning. MIT Press, Boston, 2010.
  • [10] J. Ferlay, I. Soerjomataram, M. Ervik, R. Dikshit, S. Eser, C. Mathers, M. Rebelo, D.M. Parkin, D. Forman, and F. Bray. Cancer incidence and mortality worldwide. IARC Cancer Base, No. 11, 2012.
  • [11] P. Filipczuk, T. Fevens, A. Krzyzak, and R. Monczak. Computer-aided breast cancer diagnosis based on the analysis of cytological images of fine needle biopsies. IEEE Transactions on Medical Imaging, PP(99):1–1, 2013.
  • [12] P. Filipczuk, M. Kowal, and A. Obuchowicz. Fuzzy clustering and adaptive thresholding based segmentation method for breast cancer diagnosis.Computer Recognition Systems, 4(5):613–622,2011.
  • [13] D.L. Fisher. Data, documentation and decision tables.Comm ACM, 9(1):26–31, 1966.
  • [14] Y.M. George, H.H. Zayed, M.I. Roushdy, and B.M.Elbagoury. Remote computer-aided breast cancer detection and diagnosis system based on cytological images. IEEE Systems Journal, PP(99):1–16, 2013.
  • [15] T. Hastie, R. Tibshirani, and J. Friedman. The elements of statistical learning, 2nd. edition. Springer, New York, 2009.
  • [16] S. Haykin. Neural Networks: A Comprehensive Foundation. Prentice Hall, 1998.
  • [17] R.C. Holte. Very simple classification rules perform well on most commonly used datasets. Machine Learning, 11(1):63–90, 1993.
  • [18] T. Kanungo, D. M. Mount, N. Netanyahu, C. Piatko, R. Silverman, and A. Y. Wu. An efficient k-means clustering algorithm: Analysis and implementation. In Proc. IEEE Conf. Computer Vision and Pattern Recognition, pages 881–892, 2002.
  • [19] S.B. Kotsiantis. Supervised machine learning: A review of classification techniques. Informatica, pages 249–268, 2007.
  • [20] B. Krawczyk and P. Filipczuk. Cytological image analysis with firefly nuclei detection and hybrid one–class classification decomposition. Engineering Applications of Artificial Intelligence, 31:126–135, 2014.
  • [21] B. Krawczyk, Ł. Jele´n, A. Krzy˙zak, and T. Fevens.Oversampling methods for classification of imbalanced breast cancer malignancy data. Lecture Notes in Computer Science (LNCS), 7594:483–490, 2012.
  • [22] B. Krawczyk and G. Schaefer. A hybrid classifier committee for analysing asymmetry features in breast thermograms. Applied Soft Computing, 20:112–118, 2014.
  • [23] Jihene Malek, Abderrahim Sebri, Souhir Mabrouk, Kholdoun Torki, and Rached Tourki. Automated breast cancer diagnosis based on gvf-snake segmentation, wavelet features extraction and fuzzy classification. Journal of Signal Processing Systems, 55(1-3):49–66, 2009.
  • [24] O.L. Mangasarian, R. Setiono, and W.H. Wolberg. Pattern Recognition via Linear Programming: Theory and Application to Medical Diagnosis. Large-Scale Num. Opt., Philadelphia: SIAM, pages 22–31, 1990.
  • [25] A. Marcano-Cede˜no, J. Quintanilla-Dom´ınguez, and D. Andina. WBCD breast cancer database classification applying artificial metaplasticity neural network. Expert Systems with Applications, 38(8):9573 – 9579, 2011.
  • [26] T. Mitchell. Machine Learning, Generative and Discriminative Classifiers: Naive Bayes and Logistic Regression (Draft Version). McGraw Hill, 2005.
  • [27] S.I. Niwas, P. Palanisamy, and K. Sujathan. Wavelet based feature extraction method for breast cancer cytology images. In IEEE Symposium on Industrial Electronics Applications (ISIEA), pages 686–690, Oct 2010.
  • [28] J.R. Quinlan. C4.5: Programs for Machine Learning. Morgan Kaufmann Publishers, 1993.
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  • [30] J.B.T.M Roerdink and A. Meijster. The watershed transform: definitions, algorithms, and parallelization strategies. Fundamenta Informaticae, 41:187–228, 2000.
  • [31] W.N. Street,W.H.Wolberg, and O.L. Mangasarian. Nuclear feature extraction for breast tumor diagnosis. In IS&T/SPIE Inter. Symp. on Electronic Imaging: Science and Technology, volume 1905, pages 861–870, 1993.
  • [32] W.HWolberg and O.L. Mangasarian. Multisurface Method of Pattern Separation for Medical Diagnosis Applied to Breast Cytology. Proceedings of National Academy of Science, USA, 87:9193–9196, 1990.
  • [33] Xiangchun Xiong, Yangon Kim, Yuncheol Baek, Dae Wong Rhee, and Soo-Hong Kim. Analysis of breast cancer using data mining & statistical techniques. In Proc. 6th Int. Conf. on Software Engineering, Artificial Intelligence, Networking and Parallel/Distributed Computing and 1st ACIS Int. Worksh. on Self-Assembling Wireless Networks, pages 82–87, 2005.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-8cc1944a-75b3-4185-a730-f124bdd326ca
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