Evaluation of genetic diversity and population structure of five yellow catfish Pelteobagrus fulvidraco populations by microsatellite markers

• Autorzy: Zhong L. , Wang M. , Pan J. , Li D. , Tang S. , Bian W. , Chen X.

Identyfikatory

DOI

10.1515/ohs-2018-0011

• Języki publikacji: EN

Abstrakty

EN

Yellow catfish, Pelteobagrus fulvidraco, is an important commercial freshwater species in China. Knowledge about the genetic diversity of the yellow catfish is important to support the management and conservation programs, which would subsequently support the sustainable production of this species. To investigate the genetic diversity and the structure of yellow catfish in the middle and lower reaches of the Yangtze River, 125 individuals from five lakes were genotyped using 13 microsatellite markers. Moderate genetic diversity was determined in all populations, with the observed heterozygosity (H_O) ranging from 0.42 to 0.49 and the expected heterozygosity (H_E) ranging from 0.51 to 0.61. Low to moderate genetic differentiation among the populations was revealed from pairwise F_ST values (p < 0.05), as well as from analysis of molecular variance (AMOVA). The UPGMA dendrogram and Bayesian clustering analysis indicated a correlation between genetic differences and geographic distance – four populations from the lower reaches clustered together, whereas the Poyang Lake (PY) population formed a separate cluster. The present study would be helpful in the wild stock management and artificial propagation programs for yellow catfish in the middle and lower reaches of the Yangtze River.

Słowa kluczowe

EN

Pelteobagrus fulvidraco; genetic diversity; population structure; microsatellite

• Wydawca: Institute of Oceanography University of Gdańsk
• Czasopismo: Oceanological and Hydrobiological Studies
• Rocznik: 2018
• Tom: Vol. 47, No. 2
• Strony: 99--106
• Opis fizyczny: Bibliogr. 20 poz.

Twórcy

autor

Zhong L.

• Laboratory of Fisheries Resources in Inland Water of Jiangsu Province, Freshwater Fisheries Research Institute of Jiangsu Province, 79 East Chating Street, Jianye District, Jiangsu, Nanjing 210017, China

autor

Wang M.

• Laboratory of Fisheries Resources in Inland Water of Jiangsu Province, Freshwater Fisheries Research Institute of Jiangsu Province, 79 East Chating Street, Jianye District, Jiangsu, Nanjing 210017, China

autor

Pan J.

• Laboratory of Fisheries Resources in Inland Water of Jiangsu Province, Freshwater Fisheries Research Institute of Jiangsu Province, 79 East Chating Street, Jianye District, Jiangsu, Nanjing 210017, China

autor

Li D.

• Laboratory of Fisheries Resources in Inland Water of Jiangsu Province, Freshwater Fisheries Research Institute of Jiangsu Province, 79 East Chating Street, Jianye District, Jiangsu, Nanjing 210017, China

autor

Tang S.

• Laboratory of Fisheries Resources in Inland Water of Jiangsu Province, Freshwater Fisheries Research Institute of Jiangsu Province, 79 East Chating Street, Jianye District, Jiangsu, Nanjing 210017, China

autor

Bian W.

• Laboratory of Fisheries Resources in Inland Water of Jiangsu Province, Freshwater Fisheries Research Institute of Jiangsu Province, 79 East Chating Street, Jianye District, Jiangsu, Nanjing 210017, China

autor

Chen X.

• Laboratory of Fisheries Resources in Inland Water of Jiangsu Province, Freshwater Fisheries Research Institute of Jiangsu Province, 79 East Chating Street, Jianye District, Jiangsu, Nanjing 210017, China

Bibliografia

• [1]. Agatsuma, Y., Sakai, Y., Andrew, N. & Saiko, Y. (2003). Enhancement of Japan’s sea urchin fisheries. In J.M. Lawrence (Ed.), Sea Urchins: Fisheries and Ecology. Proceeding of the International Conference on Sea Urchin Fisheries and Aquaculture (pp. 18-36). Boca Raton, FL: CRC Press.
• [2]. Botstein, D., White, R.L., Skolnick, M. & Davis, R. (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32: 314-331.
• [3]. Chen, D., Li, S. & Wang, K. (2012). Enhancement and conservation of inland fisheries resources in China. Environ. Biol. Fish. 93(4): 531-545.
• [4]. DeWoody, J.A. & Avise, J.C. (2000). Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. J. Fish. Biol. 56: 461-473.
• [5]. Excoffier, L., Laval, G. & Schneider, S. (2005). Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform Online 1: 47-50.
• [6]. Falush, D., Stephens, M. & Pritchard, J.K. (2007). Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol. Ecol. Notes 7: 574-578.
• [7]. Li, D.Y., Yin, Q.Q., Hou, N., Sun, X.W. & Liang, L.Q. (2009). Genetic diversity of different ecologo-geographical populations of yellow catfish Pseudobagrus fulvidraco. Oceanologia et Limnologia Sinica 40: 460-469.
• [8]. Liu, Z., Lu, S.Q., Zhang, J.S., Liu, H.Y., Zhang, L.D. et al. (2008). Isolation and characterization of microsatcllitcs in Pseudobagrus fulvidraco. J. Agr. Biotech. 16(4): 604-609.
• [9]. Ma, H.Y., Jiang, Y.L., Guo, J.F. & Yue, Y.S. (2006). Genetic Diversity Analysis on Pseudobagrus fulvidraco in Dongping Lake Using Microsatellite Markers. Acta Laser Biol. Sinica 15: 136-139.
• [10]. Powell, A. (2012). Examination of the population structure of darkbarbel catfish (Pelteobagrus vachelli) in the Upper Yangtze River Basin, China, using novel microsatellite markers. Unpublished master dissertation, Queen’s University, Ontario, Canada.
• [11]. Pritchard, J.K., Stephens, M. & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
• [12]. Raymond, M. & Rousset, F. (1995). GENEPOP (version1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86: 248-249.
• [13]. Rosenberg, N.A. (2004). DISTRUCT: a program for the graphical display of population structure. Mol. Ecol. Notes 4: 137-138.
• [14]. Rousset, F. & Raymond, M. (1995). Testing heterozygote excess and deficiency. Genetics 140: 1413-1419.
• [15]. Ryman, N. & Laikre, L. (1991). Effects of supportive breeding on the genetically effective population size. Conserv. Biol. 5: 325-329.
• [16]. Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 30(12): 2725-2729.
• [17]. Tautz, D. & Renz, M. (1984). Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res. 12: 4127-4138.
• [18]. Wang, Q.Y., Zhuang, Z.M., Deng, J.Y. & Ye, Y.M. (2006). Stock enhancement and translocation of the shrimp Penaeus chinensis in China. Fish. Res. 80(1): 67-79.
• [19]. Wu, Q.C., Liang, H.W., Li, Z., Hu, G.F., Luo, X.Z. et al. (2010). Isolation of microsatellite makers in the yellow catfish and its application in genetic structure in three wild populations. Biotechnol. Bull. 13: 154-159.
• [20]. Zhong, L.Q., Song, C., Wang, M.H., Chen, Y.M., Qin, Q. et al. (2013). Genetic diversity and population structure of yellow catfish pelteobagrus fulvidraco from five lakes in the middle and lower reaches of the Yangtze river, china, based on mitochondrial dna control region. Mitochondr. DNA 24(5): 552-558.

Uwagi

Opracowanie rekordu w ramach umowy 509/P-DUN/2018 ze środków MNiSW przeznaczonych na działalność upowszechniającą naukę (2018).