Implementation of omics research to enhance phytoremediation efficiency - a review

• Autorzy: Jaskulak M.

Identyfikatory

DOI

10.17512/ios.2018.4.4

Warianty tytułu

PL

Wdrożenie badań omicznych w celu zwiększenia efektywności fitoremediacji – przegląd

• Języki publikacji: EN

Abstrakty

EN

Phytoremediation is recognized as a cost-effective and widely acceptable alternative to chemical and physical technologies of soil remediation but requires an overall longer time to achieve success. In the last decade, the vast progress in omics research had led to improvements in our understanding of plants metabolism under exposure to toxic substances and the interactions between microbial communities and plants. Omics research includes a numer of disciplines aimed at explaining the biological and chemical principles of functioning a particular organism exposed to selected factors using modern methods of molecular biology (example: rt-qPCR - Quantitative polymerase chain reaction in real time). The names of individual branches of omics studies arise from a group of studied substances, example: transcriptomic refers to research related to changes occurring in the organism at the level of its transcriptome, and proteomics deals with the determination of complete information on the proteomic composition of a given sample. By merging available omics tools with new bioinformatic approaches, it is possible to understand and determinate the specific patterns of plants response to various stress factors. In this review, we provide an overview of how omics research including transcriptomic, proteomic, genomic and metagenomic approaches might be used to reduce the negative impact of toxic elements to plants growth and development in order to ultimately enhance the phytoremediation efficiency.

PL

Fitoremediacja jest uznawana za opłacalną i powszechnie akceptowaną alternatywę dla chemicznych i fizycznych technologii remediacji gleby, ale wymaga dłuższego czasu, aby osiągnąć sukces. W ostatnim dziesięcioleciu ogromny postęp w badaniach omicznych doprowadził do poprawy zrozumienia metabolizmu roślin poddanych ekspozycji na substancje toksyczne oraz interakcji pomiędzy mikroorganizmami symbiotycznymi a roślinami. Badania omiczne obejmują szereg dyscyplin zmierzających do wyjaśniania biologiczno-chemicznych zasad funkcjonowania wybranego organizmu poddanego danym czynnikom za pomocą nowoczesnych metod biologii molekularnej (np. rt-qPCR - ilościowa reakcja łańcuchowa polimerazy w czasie rzeczywistym). Nazwy poszczególnych gałęzi badań omicznych powstają od grupy badanych substancji, np. transkryptomika dotyczy badań związanych ze zmianami zachodzącymi w organizmie na poziomie jego transkryptomu, a proteomika zajmuje się określeniem pełnej informacji o składzie proteomicznym danej próbki. Łącząc dostępne narzędzia omiczne z nowymi technikami bioinformatycznymi, możliwe jest zrozumienie i określenie specyficznych wzorców reakcji komórek roślin na różne czynniki stresowe. W pracy przedstawiono przegląd najnowszych badań omicznych, w tym transkryptomicznych, proteomicznych, genomicznych i metagenomicznych, stosowanych w badaniach nad zmniejszeniem negatywnego wpływu toksycznych substancji na wzrost i rozwój roślin w celu zwiększenia skuteczności procesu fitoremediacji.

Słowa kluczowe

EN

phytoremediation; heavy metals; phytotoxicity; omics; transcriptomics; genomics

PL

fitoremediacja; metale ciężkie; fitotoksyczność; badania omiczne; transkryptomika; genomika

• Wydawca: Wydawnictwo Politechniki Częstochowskiej
• Czasopismo: Inżynieria i Ochrona Środowiska
• Rocznik: 2018
• Tom: T. 21, nr 4
• Strony: 361--373
• Opis fizyczny: Bibliogr. 34 poz.

Twórcy

autor

Jaskulak M.

• Czestochowa University of Technology, Faculty of Infrastructure and Environment, Institute of Environmental Engineering, ul. Brzeźnicka 60A, 42-201 Częstochowa
• Université Lille Nord de France, LGCgE-Lille 1, Ecologie Numérique et Ecotoxicologie, F-59650 Villeneuve d’Ascq, France

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Uwagi

Opracowanie rekordu w ramach umowy 509/P-DUN/2018 ze środków MNiSW przeznaczonych na działalność upowszechniającą naukę (2019).