Massive identification of similarities in DNA materials organized in GRID environment

• Autorzy: Piwowar M. , Szepieniec T. , Roterman I.
• Języki publikacji: EN

Abstrakty

EN

In this paper we presented, how computations related to Genomics, could be organize on gLite-grid. The grid environment gives opportunity to radically speed-up computational part in research on this field. The authors belive that similar methodology would be adapted to other applications as well.

Słowa kluczowe

EN

grid; similarity; protein

PL

GRID; podobieństwo; białko

• Wydawca: Uniwersytet Jagielloński - Collegium Medicum ; Index Copernicus Sp. z o.o.
• Czasopismo: Bio-Algorithms and Med-Systems
• Rocznik: 2007
• Tom: Vol. 3, no. 5
• Strony: 51--52
• Opis fizyczny: Bibliogr. 10 poz.

Twórcy

autor

Piwowar M.

• Department of Bioinformatics & Telemedicine Collegium Medicum UJ, Kraków, Poland

autor

Szepieniec T.

• Department of Bioinformatics & Telemedicine Collegium Medicum UJ, Kraków, Poland ACK CYFRONET AGH, Kraków, Poland

autor

Roterman I.

• Department of Bioinformatics & Telemedicine Collegium Medicum UJ, Kraków, Poland

Bibliografia

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• 7. Jardine N., Sibson, R.: The construction of hierarchic and nonhierarchic classifications. The Computer Journal 11:177, 1968.
• 8. Saeys Y., Rouzé P., Van de Peer Y.: In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists. Bioinformatics 23 (4):414-420. DOI:10.1093/bioinformatics/btl639, 2007.
• 9. Brylinski M., Jurkowski W., Konieczny L., Roterman I.: Limited conformational space for early-stage protein folding simulation. Bioinformatics 20, 199-205, 2004.
• 10. Brylinski M., Konieczny L., Roterman I.: Fuzzy-oil-drop hydrophobic force field - a model to represent late-stage folding (in silico) of lysozyme. J Biomol Struct Dyn. 23, 519-528, 2006.