PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
Tytuł artykułu

16S rRNA Gen Analysis of Plastic Destruction Bacteries, South Sumatra, Indonesia

Treść / Zawartość
Identyfikatory
Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
Rivers are the main route for plastic entering the ocean, including the Musi River Estuary. Characteristics of bacteria that are able to degrade plastic waste through polymerase enzymes. The aim of this research is to determine the ability of bacterial isolates to degrade plastic and identify the types of bacteria that degrade plastic waste. This study used plastic bottles, nylon nets, and snack wrappers as objects for degradation measurement. Identification analysis of the 16S rRNA gene using universal PCR primers for bacteria in the form of forward primer 63f (5’-CAG GCC TAA CAC ATG CAA GTC-3’) and reverse primer 1387r (5’-GGG CGG WGT GTA CAA GGC-3’). The type of bacteria with the highest percentage of degradation over 20 days, amounting to 7.75%, was Bacillus amyloliquefaciens. Identification of types of plastic degrading bacteria using 16S rRNA gene analysis showed 11 bacteria with 8 types including Staphylococcus hominis, Pseudomonas aeruginosa, Acinetobacter sp., Acinetobacter baumannii, Acinetobacter variabilis, Shewanella sp., Micrococcus luteus, and Bacillus amyloliquefaciens. The percentage of plastic degradation by bacteria is relatively small, so it is best to look for times where there is potential for bacterial growth.
Słowa kluczowe
Rocznik
Strony
85--95
Opis fizyczny
Bibliogr. 55 poz., rys., tab.
Twórcy
  • Environmental Management Study Program, Graduate Program, Universitas Sriwijaya, Palembang 30139, South Sumatra, Indonesia
autor
  • Department of Marine Science, Faculty of Mathematics and Natural Sciences, Universitas Sriwijaya, Indralaya 30862, South Sumatra, Indonesia
  • Department of Marine Science, Faculty of Mathematics and Natural Sciences, Universitas Sriwijaya, Indralaya 30862, South Sumatra, Indonesia
  • Department of Marine Science, Faculty of Mathematics and Natural Sciences, Universitas Sriwijaya, Indralaya 30862, South Sumatra, Indonesia
  • Department of Marine Science, Faculty of Mathematics and Natural Sciences, Universitas Sriwijaya, Indralaya 30862, South Sumatra, Indonesia
  • National Research and Innovation Agency, Earth and Maritime Research Organization, Research Center for Marine Resources and Inland Aquatic Resources Conservation, Palembang 30137, South Sumatra, Indonesia
  • Department of Marine Science, Faculty of Mathematics and Natural Sciences, Universitas Sriwijaya, Indralaya 30862, South Sumatra, Indonesia
Bibliografia
  • 1. Abirami G., Srimathi M., Suganthi M., Ramprasath C., Manjunathan J. 2021. Plastic Degrading Ability of Laccase Enzyme Isolated From Garbage Dumping Sites of Chennai. Poll Res, 40(1), 199–202.
  • 2. Afreen B., Nouman Rasoo N.R., Saima I. 2020. Characterization of plastic degrading bacteria isolated from landfill sites. International Journal of Clinical Microbiology and Biochemical Technology, 4(1), 30–35.
  • 3. Ahmed R.S., Swargiary M.D. 2021. Plastic and petroleum hydrocarbon degrading potentials of single and mixed bacterial cultures isolated from garbage areas of darrang, Assam. Nature Environment and Pollution Technology, 20(1), 275–280.
  • 4. Akihary C.V., Kolondam B.J. 2020. Utilization of the 16S rRNA gene as a bacterial identification device for research in Indonesia. Pharmacon, 9(1), 16–22.
  • 5. Al-Kadmy I.M.S., Aziz S.N., Suhail A., Abid S.A., Naji E.N., Al-Kadmy Z., Algammal A.M., Ahmed H.R., Khodeer D.M., Batiha G.E.S., Hetta H.F. 2023. Enhancing the anti-biofilm activity of novel keratinase isolated from Acinetobacter baumannii using Reduced Graphene oxide: A way to recycle feather waste pollution. Cleaner Waste Systems, 5, 100087.
  • 6. Al-Kahtani M.D.F., Fouda A., Attia K.A., Al-Otaibi F., Eid A.M., Ewais E.E.-D., Hijri M., St-Arnaud M., Hassan S.E.-D., Khan N. 2020. Isolation and characterization of plant growth promoting endophytic bacteria from desert plants and their application as bioinoculants for sustainable agriculture. Agronomy, 10(9), 1325.
  • 7. Alamer N.J., Aldayel M.F., Khalifa A. 2023. Isolation and characterization of Brucella spp., low-density polyethylene (LDPE) plastic degrading bacteria in Al-Ahsa Region, Saudi Arabia. Applied Sciences, 13(7), 4629.
  • 8. Ali S., Rehman A., Hussain S.Z., Bukhari D.A. 2023. Characterization of plastic degrading bacteria isolated from sewage wastewater. Saudi Journal of Biological Sciences, 30(5), 103628.
  • 9. Asiandu A.P., Wahyudi A., Sari S.W. 2020. A review: Plastics waste biodegradation using plasticsdegrading bacteria. Journal of Environmental Treatment Techniques, 9(1), 148–157.
  • 10. Ballard D., Winkler-Galicki J., Wesoły J. 2020. Massive parallel sequencing in forensics: advantages, issues, technicalities, and prospects. International Journal of Legal Medicine, 134(4), 1291–1303.
  • 11. Bao R., Cheng Z., Hou Y., Xie C., Pu J., Peng L., Gao L., Chen W., Su Y. 2022. Secondary microplastics formation and colonized microorganisms on the surface of conventional and degradable plastic granules during long-term UV aging in various environmental media. Journal of Hazardous Materials, 439, 129686.
  • 12. Birami F.A., Keshavarzi B., Moore F., Busquets R., Zafarani S.G.G., Golshani R., Cheshmvahm H. 2022. Microplastics in surface sediments of a highly urbanized wetland. Environmental Pollution, 314, 120276.
  • 13. Buchholz P.C.F., Feuerriegel G., Zhang H., PerezGarcia P., Nover L.L., Chow J., Streit W.R., Pleiss J. 2022. Plastics degradation by hydrolytic enzymes: The plastics-active enzymes database—PAZy. Proteins: Structure, Function and Bioinformatics, 90(7), 1443–1456.
  • 14. Cappucinno, Sherman. 1999. Microbiology – A Laboratory Manual. California:The Benjamin/ Cummings Publishing.
  • 15. Charnock C. 2021. Norwegian soils and waters contain mesophilic, plastic-degrading bacteria. Microorganisms, 9(1), 1–18.
  • 16. Dalimunthe A.M., Amin B., Nasution S. 2021. Microplastic in the Digestive Tract of Kurau (Polydactylus octonemus) in the Coastal Waters of Karimun Besar Island, Riau Islands Province. Journal of Coastal and Ocean Sciences, 2(2), 80–86.
  • 17. Delacuvellerie A., Benali S., Cyriaque V., Moins S., Raquez J.M., Gobert S., Wattiez R. 2021. Microbial biofilm composition and polymer degradation of compostable and non-compostable plastics immersed in the marine environment. Journal of Hazardous Materials, 419, 126526.
  • 18. Dissanayake A.J., Bhunjun C.S., Maharachchikumbura S.S.N., Liu J.K. 2020. Applied aspects of methods to infer phylogenetic relationships amongst fungi. Mycosphere, 11(1), 2652–2676.
  • 19. Eashur E.Y., Jasim M.A. 2022. Plastic waste biodegradation by local bacterial isolates in Ramadi City. Journal of University of Anbar for Pure Science, 14(1), 1–5.
  • 20. Emmanuel-Akerele H.A., Akinyemi P.O. 2022. Physico-chemical and microbiological assessment of soils from dumpsites for plastic degrading microorganisms. Pollution, 8(2), 501–512.
  • 21. Fawcett L.P., Fringer V.S., Sieber J.R., Maurer-Jones M.A. 2021. The effect of plastic additives on Shewanella oneidensis growth and function. Environmental Science: Processes and Impacts, 23(7), 956–966.
  • 22. Fibriarti B.L., Feliatra, Amin B., Darwis. 2021. Biodegradation of ldpe plastic by local strain of Bacillus sp. Isolated from dump soil of pekanbaru, indonesia. Biodiversitas, 22(12), 5484–5490.
  • 23. Fitria Y., Rozirwan, Fitrani M., Nugroho R.Y., Fauziyah, Putri W.A.E. 2023. Gastropods as bioindicators of heavy metal pollution in the Banyuasin estuary shrimp pond area, South Sumatra, Indonesia. Acta Ecologica Sinica, 43(6), 1129–1137.
  • 24. Galarza-Verkovitch D., Turak O., Wiese J., Rahn T., Hentschel U., Borchert E. 2023. Bioprospecting for polyesterase activity relevant for PET degradation in marine Enterobacterales isolates. AIMS Microbiology, 9(3), 518–539.
  • 25. Gerritse J., Leslie H.A., Tender C.A. de, Devriese L.I., Vethaak A.D. 2020. Fragmentation of plastic objects in a laboratory seawater microcosm. Scientific Reports, 10(1), 1–16.
  • 26. Jaiswal K.K., Dutta S., Banerjee I., Pohrmen C.B., Singh R.K., Das H.T., Dubey S., Kumar V. 2022. Impact of aquatic microplastics and nanoplastics pollution on ecological systems and sustainable remediation strategies of biodegradation and photodegradation. Science of the Total Environment, 806, 151358.
  • 27. Janda J.M., Abbott S.L. 2007. 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: Pluses, perils, and pitfalls. Journal of Clinical Microbiology, 45(9), 2761–2764.
  • 28. Ji J., Zhao T., Li F. 2022. Remediation technology towards zero plastic pollution: Recent advance and perspectives. Environmental Pollution, 313, 120166.
  • 29. Johnson J.S., Spakowicz D.J., Hong B.-Y., Petersen L.M., Demkowicz P., Chen L., Leopold S.R., Hanson B.M., Agresta H.O., Gerstein M. 2019. Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis. Nature communications, 10(1), 5029.
  • 30. Kapli P., Yang Z., Telford M.J. 2020. Phylogenetic tree building in the genomic age. Nature Reviews Genetics, 21(7), 428–444.
  • 31. Le T.T.H., Fettig J., Meon G. 2019. Kinetics and simulation of nitrification at various pH values of a polluted river in the tropics. Ecohydrology & Hydrobiology, 19(1), 54–65.
  • 32. Li S., Yang Y., Yang S., Zheng H., Zheng Y., M J, Nagarajan D., Varjani S., Chang J.S. 2023. Recent advances in biodegradation of emerging contaminants - microplastics (MPs): Feasibility, mechanism, and future prospects. Chemosphere, 331, 138776.
  • 33. Li W., Zhang Y., Wu N., Zhao Z., Xu W., Ma Y., Niu Z. 2019. Colonization characteristics of bacterial communities on plastic debris influenced by environmental factors and polymer types in the Haihe Estuary of Bohai Bay, China. Environmental science & technology, 53(18), 10763–10773.
  • 34. Lin Z., Jin T., Zou T., Xu L., Xi B., Xu D., He J., Xiong L., Tang C., Peng J., Zhou Y., Fei J. 2022. Current progress on plastic/microplastic degradation: Fact influences and mechanism. Environmental Pollution, 304, 119159.
  • 35. Marchesi J.R., Sato T., Weightman A.J., Martin T.A., Fry J.C., Hiom S.J., Wade W.G. 1998. Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Applied and Environmental Microbiology, 64(2), 795–799.
  • 36. Mason C.F. 1991. Biology of Freshwater Pollution. New York:Longman Scientific & Technical. 351 p.
  • 37. Melki M., Isnansetyo A., Widada J., Murwantoko M. 2018a. The significance of water quality parameters on the diversity of ammonia-oxidizing bacteria in the water surface of musi river, Indonesia. AACL Bioflux, 11(6), 1908–1918.
  • 38. Melki M., Isnansetyo A., Widada J., Murwantoko M. 2018b. Distribution of ammonium-oxidizing bacteria in sediment with relation to water quality at the Musi River, Indonesia. Hayati Journal of Bioscience, 25(4), 198–205.
  • 39. Nchedo Ariole C., George-West O. 2020. Bioplastic degradation potential of microorganisms isolated from the soil. American Journal of Chemical and Biochemical Engineering, 4(1), 1–7.
  • 40. Nurdhy S.N. 2020. Potentials and Challenges of Existing Plastic Pollutant Biodegradation Using Bacteria in Jakarta Bay. Proceeding International Conference on Science and Engineering, 3, 475–485.
  • 41. Peker N., Garcia-Croes S., Dijkhuizen B., Wiersma H.H., Zanten E van, Wisselink G., Friedrich A.W., Kooistra-Smid M., Sinha B., Rossen J.W.A. 2019. A comparison of three different bioinformatics analyses of the 16S–23S rRNA encoding region for bacterial identification. Frontiers in microbiology, 10, 620.
  • 42. Rozirwan, Az-Zahrah S.A.F., Khotimah N.N., Nugroho R.Y., Putri W.A.E., Fauziyah, Melki, Agustriani F., Siregar YI. 2024. Ecological risk assessment of heavy metal contamination in water, sediment, and polychaeta (Neoleanira Tetragona) from coastal areas affected by aquaculture, urban rivers, and ports in South Sumatra. Journal of Ecological Engineering, 25(1), 303–319.
  • 43. Rozirwan, Fauziyah, Wulandari P.I., Nugroho R.Y., Agutriani F., Agussalim A., Supriyadi F., Iskandar I. 2022. Assessment distribution of the phytoplankton community structure at the fishing ground, Banyuasin estuary, Indonesia. Acta Ecologica Sinica, 42, 670–678.
  • 44. Rozirwan, Melki, Apri R., Nugroho R.Y., Fauziyah, Agussalim A., Iskandar I. 2021. Assessment of phytoplankton community structure in Musi Estuary, South Sumatra, Indonesia. AACL Bioflux, 14, 1451–1463.
  • 45. Rozirwan, Saputri A.P., Nugroho R.Y., Khotimah N.N., Putri W.A.E., Fauziyah, Purwiyanto A.I.S. 2023. An assessment of Pb and Cu in waters, sediments, and mud crabs (Scylla serrata) from mangrove ecosystem near Tanjung Api-Api port area, South Sumatra, Indonesia. Science and Technology Indonesia, 8(4), 675–683.
  • 46. Sianturi K.P.T., Amin B., Galib M. 2021. Microplastic distribution in sediments in coastal of Pariaman City, West Sumatera province. Asian Journal of Aquatic Sciences, 4(1), 73–79.
  • 47. Skleničková K., Abbrent S., Halecký M., Kočí V., Beneš H. 2022. Biodegradability and ecotoxicity of polyurethane foams: A review. Critical Reviews in Environmental Science and Technology, 52(2), 157–202.
  • 48. Sridharan S., Kumar M., Bolan N.S., Singh L., Kumar S., Kumar R., You S. 2021. Are microplastics destabilizing the global network of terrestrial and aquatic ecosystem services? Environmental Research, 198, 111243.
  • 49. Syakti A.D., Bouhroum R., Hidayati N.V., Koenawan C.J., Boulkamh A., Sulistyo I., Lebarillier S, Akhlus S., Doumenq P., Wong-Wah-Chung P. 2017. Beach macro-litter monitoring and floating microplastic in a coastal area of Indonesia. Marine Pollution Bulletin, 122(1–2), 217–225.
  • 50. Tong H., Zhong X., Duan Z., Yi X., Cheng F., Xu W., Yang X. 2022. Micro- and nanoplastics released from biodegradable and conventional plastics during degradation: Formation, aging factors, and toxicity. Science of the Total Environment, 833, 155275.
  • 51. Vianti R.O., Melki, Rozirwan, Purwiyanto AIS. 2020. Purification and degradation test for microplastic bacteria from the waters of the Musi river estuary, South Sumatra. Maspari Journal: Marine Science Research, 12(2), 29–36.
  • 52. Wei W., Wang C., Shi X., Zhang Y.-T., Chen Z., Wu L., Ni B.-J. 2022. Multiple microplastics induced stress on anaerobic granular sludge and an effectively overcoming strategy using hydrochar. Water Research, 222, 118895.
  • 53. Wu X., Liu P., Zhao X., Wang J., Teng M., Gao S. 2022. Critical effect of biodegradation on long-term microplastic weathering in sediment environments: A systematic review. Journal of Hazardous Materials, 437, 129287.
  • 54. Xiang P., Zhang T., Wu Q., Li Q. 2023. Systematic review of degradation processes for microplastics: Progress and prospects. Sustainability, 15(17).
  • 55. Zubair M., Hanif A., Farzand A., Sheikh T.M.M., Khan A.R., Suleman M., Ayaz M., Gao X. 2019. Genetic screening and expression analysis of psychrophilic Bacillus spp. reveal their potential to alleviate cold stress and modulate phytohormones in wheat. Microorganisms, 7(9), 337.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-bfcc2407-1415-4882-b8ec-3c24679a8e89
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.