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Identification and characterisation of oil sludge degrading bacteria isolated from compost

Treść / Zawartość
Identyfikatory
Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
Compounds present in oil sludge such as polycyclic aromatic hydrocarbons (PAHs) are known to be cytotoxic, mutagenic and potentially carcinogenic. Microorganisms including bacteria and fungi have been reported to degrade oil sludge components to innocuous compounds such as carbon dioxide, water and salts. In the present study, we isolated different bacteria with PAH-degrading capabilities from compost prepared from oil sludge and animal manures. These bacteria were isolated on a mineral base medium and mineral salt agar plates. A total of 31 morphologically distinct isolates were carefully selected from 5 different compost treatments for identification using polymerase chain reaction (PCR) of the 16S rRNA gene with specific primers (universal forward 16S-P1 PCR and reverse 16S-P2 PCR). The amplicons were sequenced and sequences were compared with the known nucleotides from the GenBank. The phylogenetic analyses of the isolates showed that they belong to 3 different clades; Firmicutes, Proteobacteria and Actinobacteria. These bacteria identified were closely related to the genera Bacillus, Arthrobacter, Staphylococcus, Brevibacterium, Variovorax, Paenibacillus, Ralstonia and Geobacillus. The results showed that Bacillus species were predominant in all composts. Based on the results of the degradation of the PAHs in the composts and results of previous studies on bacterial degradation of hydrocarbons in oil, the characteristics of these bacterial isolates suggests that they may be responsible for the breakdown of PAHs of different molecular weights in the composts. Thus, they may be potentially useful for bioremediation of oil sludge during compost bioremediation.
Rocznik
Strony
67--77
Opis fizyczny
Bibliogr. 41 poz., tab., wykr.
Twórcy
autor
  • University of South Africa, South Africa Department of Environmental Sciences
  • University of South Africa, South Africa Institute for Science and Technology Education
  • University of Pretoria, South Africa Department of Microbiology and Plant Pathology
autor
  • Agricultural Research Council, South Africa Institute for Soil, Climate and Water
Bibliografia
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  • [5]. Bobak, D.M. (2010). Polycyclic aromatic hydrocarbon characterization in Otter Creek, Northwest Ohio. Submitted as partial fulfilment of the requirements for the Master of Science Degree in Geology, College of Graduate Studies, University of Toledo 2010.
  • [6]. Bojes, H.K. & Pope, P.G. (2007). Characterization of EPA’s 16 priority pollutant polycyclic aromatic hydrocarbons (PAHs) in tank bottom solids and associated contaminated soils at oil exploration and production sites in Texas, Regulatory Toxicology and Pharmacology, 47, 3, pp. 288–295.
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  • [9]. Darsa, K.V., Thatheyus, J.A. & Ramya, D. (2014). Biodegradation of Petroleum compound using the bacterium Bacillus subtilis, Science International, 2, 1, pp. 20–25.
  • [10]. Diallo, M., Cagin, T., Faulon, J.L. & Goddard, W.A. (2000). Thermodynamic properties of asphaltene: a predictive approach based on computer assisted structure elucidated and atomistic simulations, in: Asphaltene and asphalts II, Yen, T.F. & Chilingarian, G.V. (Eds.). Developments in petroleum science 40B, Elsevier Amsterdam, pp.103–127.
  • [11]. Ganesh, A. & Lin, J. (2009). Diesel degradation and biosurfactant production by Gram-positive isolates, African Journal of Biotechnology, 8, 21, pp. 5847–5854.
  • [12]. Gupta, B. (2012). Isolation and characterisation of Naphthalene degrading bacteria. A Master’s thesis submitted to the department of Environmental Science and Technology, Tharpar University, Patiala 2012.
  • [13]. Harikrishna, Y.N., Narasimhulu, K. & Bhanu, P.M. (2012). Studies on the potential of bacillus subtilis in the biodegradation of engine oil, Journal of Chemical, Biological and Physical Sciences, 2, 3, pp. 1599–1603.
  • [14]. Inceoglu, O., Hoogwout, E.F., Hill, P. & van Elsas, J.D. (2010). Effect of DNA extraction method on the apparent microbial diversity of soil, Applied and Environmental Microbiology, 76, pp. 3378–3382.
  • [15]. Katsivela, E., Moore, E.R.B. & Kalogerakis, N. (2005). Biodegradation of aliphatic and aromatic hydrocarbons: specificity among bacteria isolated from refinery waste sludge, Water, Air and Soil Pollution: Focus, 3, pp. 103–115.
  • [16]. Kumar, A., Munjal, A. & Sawhney, R. (2011). Crude oil PAH constitution, degradation pathway and associated bioremediation microflora: An overview, Journal of Environmental Science,1, 7, pp. 1420–1439.
  • [17]. Kumari, B., Singh, S.N. & Singh, D.P. (2012). Characterization of two biosurfactant producing strains in crude oil degradation, Process Biochemistry, 47, pp. 2463–2471.
  • [18]. Lily, M.K., Bahuguna, A., Dangwal, K. & Garg, V. (2009). Degradation of benzo(a)pyrene by a novel strain bacillus subtilis BMT4i (MTCC 9447), Brazilian Journal of Microbiology, 40, pp. 884–892.
  • [19]. Liu, W., Luo, Y., Teng, Y., Li, Z. & Ma, L.Q. (2010). Bioremediation of oily sludge-contaminated soil by stimulating indigenous microbes, Environmental Geochemistry and Health, 32, pp. 23–29.
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  • [21]. Mallick, S., Chatterjee, S. & Dutta, T.K. (2007). A novel degradation pathway in the assimilation of phenanthrene by Staphylococcus sp. strain PN/Y via meta-cleavage of 2-hydroxy-1-naphthoic acid: formation of trans-2,3-dioxo-5-(29-hydroxyphenyl)-pent-4-enoic acid, Microbiology, 153, pp. 2104–2115.
  • [22]. Marin Millàn, J.A. (2004). Bioremediaciỏn, mediante tècnicas biológicas, de hidrocarburos contenidos en lodos de refinerỉa. Experinecias en clima semiảrido, PhD thesis, Murcia University 2004.
  • [23]. Mokni-Tlili, S., Jaoua, L., Murano, F., Jedidi, N. & Hassen, A. (2009). Study of the effects of urban organic residues on the distribution of culturable actinomycetes in a Tunisian agricultural soil, Waste Management & Research, 27, pp. 224–232.
  • [24]. Moody, J.D., Fu, P.P., Freeman, J.P & Cerniglia, C.E. (2004). Regioand stereoselective metabolism of 7,12-Dimethylbenz[a] anthracene by Mycobacterium vanbaalenii PYR-1, Applied and Environmental Microbiology, 69,7, pp. 3924–3931
  • [25]. Ouyang, W., Liu, H., Murygina, V., Yu, Y., Xiu, Z. & Kalyuzhny, S. (2005). Comparison of bioaugmention and composting for remediation of oil sludge. A field-scale study in China, Process Biochemistry, 40, pp. 3763–3768.
  • [26]. Paulauskiene, T., Zabukas, V. & Vaitiekunas, P. (2009). Investigation of volatile organic compound (VOC) emission in oil terminal storage Tank Park, Journal of Environmental Engineering and Landscape Management, 17, 2, pp. 81–89.
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  • [28]. Saman, S., Slattery, P. & Saman, S. (2010). Microbial Biodiversity Investigation techniques. Life Sciences Department, Massachusetts Bay Community College, Wellesley, MA. 02481, USA, Applied Microbiology and Biotechnology, pp.1546–1550.
  • [29]. Sonawdekar, S. (2012). Bioremediation: A boon to hydrocarbon degradation, International Journal of Environmental Sciences, 2, 4, pp. 2408–242.
  • [30]. Sho, M., Hamel, C. & Greer, C.W. (2004). Two distinct gene clusters encode pyrene degradation in Mycobacterium sp. strain S65, FEMS Microbiology Ecology, 48, pp. 209–220.
  • [31]. Singh, K. & Chandra, S. (2014). Treatment of petroleum hydrocarbon polluted environment through bioremediation: A review, Pakistan Journal of Biological Sciences, 17, 1, pp. 1–8.
  • [32]. Sirota-Madi, A., Olender, T., Helman, Y., Ingham, C., Brainis, I., Roth, D., Hagi, E., Brodsky, L., Leshkowitz, D. & Galatenko, V. (2010). Genome sequence of the pattern forming Paenibacillus vortex bacterium reveals potential for thriving in complex environments, BMC Genomics, 11, pp. 710.
  • [33]. Sørensen, S.R., Albers, C.N. & Aamand, J. (2008). Rapid mineralisation of the phenylurea herbicide diuron by Variovorax sp. Strain SRS16 in pure culture and within a two-member consortium, Applied and Environmental Microbiology, 74, 8, pp. 2332–2340.
  • [34]. Srinivasarao-Naik, B., Mishra, I.M. & Bhattacharya, S.D. (2011). Biodegradation of total petroleum hydrocarbons from oily sludge, Bioremediation Journal, 15, 3, pp. 140–147.
  • [35]. Udotong, I.R., Udotong, I.J., Inam, E. & Kim, K. (2011). Bioconversion of crude oil production into soil conditioner Using sawdust as Organic amendment, Geosystem Engineering,14, 2, pp. 51–58.
  • [36]. US EPA method 3541(SW-846) (1994). Automated Soxhlet Extraction.
  • [37]. Unell, M. (2008). Physiological, genetic and proteomic characterisation of Arthrobacter Chlorophenolicus during growth on different phenolic substrates or temperature. A PhD. Thesis submitted to the Department of Microbiology, Faculty of Natural Resource and Agricultural Science, Swedish University of Agricultural Science, Uppsala 2008.
  • [38]. US EPA method 8270 (2007). Semivolatile organic compounds by gas chromatography/mass spectrometry (GC/MS).
  • [39]. Vanishree, M., Thatheyus, A.J. & Ramya, D. (2014). Biodegradation of petrol using Aspergillus sp, Annual Review & Research in Biology, 4, 6, pp. 914–923.
  • [40]. Wang, Q., Zhang, S., Li, Y. & Klassen, W. (2011). Potential approaches to improving biodegradation of hydrocarbons for bioremediation of crude oil pollution, Journal Environmental Protection, 2, pp. 47–55
  • [41]. Kebria, D.Y., Khodadadi, A., Ganjidoust, H., Badkoubi, A. & Amoozegar, M.A. (2009). Isolation and characterization of a novel native Bacillus strain capable of degrading diesel fuel, International journal of Environmental Science and Technology, 6, 3, pp. 435–442.
Uwagi
Opracowanie ze środków MNiSW w ramach umowy 812/P-DUN/2016 na działalność upowszechniającą naukę.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-bed96f93-dc92-4aba-be9b-45bd4426a156
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