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Application of culture dependent methods and culture-independent methods (DGGE analysis) to study Lactic acid bacteria ecology of Ivorian fermented fish Adjuevan

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EN
Abstrakty
EN
The occurrence of lactic acid bacteria flora (LAB) was investigated on Ivorian fermented fish Adjuevan products produced with sea fish at different salt concentration (10, 15, 20, 25, 30%) according two traditional methods. LAB biodiversity was investigated using traditional culture-dependent method and culture-independent method (DGGE). LAB isolates were Lactobacillus fermentum 54%, Leuconostoc lactis subsp lactis 27%, Pediococcus pentosaceus 19% according method 1 and Pediococcus pentosaceus 61%, Lactococcus garviae 32%, Streptococcus diffi cilis 7% for method 2. The results of culture-independent method using DGGE patterns and sequencing of DNA bands revealed a higher number of lactic acid bacteria species even if the identification of several lactic acid bacteria species were not possible by traditional microbiological procedures. LAB were Lactobacillus delbrueckii subsp bulgaricus, Lactobacillus helveticus, Leuconostoc lactis, Lactococcus raffi nolactis. Microflora was influence by salt percentage and more by the method of fermentation used. The molecular method DGGE which used three primers Lac1, Lac2GC and Lac3 to study LAB biodiversity directly in the fermented fish matrix, have allowed us to get a more complete picture of the dominant lactic acid bacteria diversity in these fermented product Adjuevan.
Słowa kluczowe
Rocznik
Strony
51--56
Opis fizyczny
Bibliogr. 27 poz., rys., tab.
Twórcy
  • Centre de Coopération Internationale en Recherche Agronomique pour le Développement, CIRAD, UMR Qualisud, TA 95B/16, 34398 Montpellier Cedex 5, France
  • University of Abobo-Adjame Laboratory of Microbiology and Molecular Biology, Unit Training and Research in Food Science and Technology (UFR-STA), 02 BP 801 Abidjan 02, Côte d’Ivoire
  • University of Abobo-Adjame Laboratory of Microbiology and Molecular Biology, Unit Training and Research in Food Science and Technology (UFR-STA), 02 BP 801 Abidjan 02, Côte d’Ivoire
autor
  • University of Abobo-Adjame Laboratory of Microbiology and Molecular Biology, Unit Training and Research in Food Science and Technology (UFR-STA), 02 BP 801 Abidjan 02, Côte d’Ivoire
autor
  • University of Abobo-Adjame Laboratory of Microbiology and Molecular Biology, Unit Training and Research in Food Science and Technology (UFR-STA), 02 BP 801 Abidjan 02, Côte d’Ivoire
autor
  • Centre de Coopération Internationale en Recherche Agronomique pour le Développement, CIRAD, UMR Qualisud, TA 95B/16, 34398 Montpellier Cedex 5, France
Bibliografia
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  • [3] Østergaard, A., et al. “Fermentation and spoilage of som--fak, a Thai low-salt fi sh product”. Trop. Sci. 38 (1998): 105–112.
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  • [5] Paludan-Müller, C., et al. “Fermentation and microfl ora of plaa-som, a Thai fermented fish product prepared with different salt concentrations”. International Journal of Food Microbiology 73 (2002): 61–70.
  • [6] Owens, J.D., and L.S. Mendoza. “Enzymatically hydrolysed and bacterially fermented fishery products”. Journal of Food Technology 20 (1985): 273–293.
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  • [15] Ehrmann, M.A., and R.F. Vogel. “Molecular taxonomy and genetics of sourdough lacticacid bacteria”. Trends in Food Science and Technology 16 (2005): 31–42.
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  • [22] Sheffi eld, V.C., et al. “Attachment of a 40 bp G+C riche sequence (GC-clamp) to genomic DNA fragment by polymerase chain reaction result in improved detection of single- base changes”. Th e proceeding of the National Academy of sciences USA 86 (1989): 232–236.
  • [23] Muyzer, G., E.C. De Waal, and A.G. Uitterlinden. “Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplifi ed genes coding for 16S rRNA”. Applied and Environ. Microbiol. 59 (1993): 695–700.
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Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-b9c15537-21b7-42b2-af8c-cd6a83f00627
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