PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
Tytuł artykułu

New multiplex PCR assays for estimating genetic diversity in rainbow trout (Oncorhynchus mykiss) by polymorphism of microsatellite DNA

Treść / Zawartość
Identyfikatory
Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
Multiplex PCR is a useful technique for estimating genetic diversity. This paper presents 3 new sets of primer pairs for effectively amplifying 10 microsatellite DNA loci from rainbow trout (Oncorhynchus mykiss). Unlike other sets of primer pairs that have been developed for amplifying rainbow trout microsatellite loci, ours do not require the hot-start PCR technique. In the paper, we describe the steps taken to choose the loci for each multiplex assay and to verify the genotyping results. We provide the compositions of the PCR mixture and the characteristics of the PCR thermal profile recommended for amplification.
Rocznik
Strony
19--24
Opis fizyczny
Bibliogr. 14 poz., tab., wykr.
Twórcy
  • Department of Environmental Biotechnology, University of Warmia and Mazury in Olsztyn, Słoneczna 45G, 10-718 Olsztyn, Poland; Phone: +48 089 523 41 62
autor
  • Department of Environmental Biotechnology, University of Warmia and Mazury in Olsztyn, Poland
Bibliografia
  • Butler, J.M., C.M. Ruitberg, P.M. Vallone. 2001. Capillary electrophoresis as a tool for optimization of multiplex PCR reactions. Fresenius Journal of Analytical Chemistry 369: 200–205.
  • Edwards, M.C., R.A. Gibbs. 1994. Multiplex PCR: advantages, development, and applications. PCR Methods and Applications 3: 65–75.
  • Fishback, A.G., R.G. Danzmann, T. Sakamoto, M.M. Ferguson. 1999. Optimization of semi-automated microsatellite multiplex polymerase chain reaction systems for rainbow trout (Oncorhynchus mykiss). Aquaculture 172: 247–254.
  • Guyomard, R., S. Mauger, K. Tabet-Canale, S. Martineau, C. Genet, F. Krieg, E. Quillet. 2006. A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms. BMC Genomics 7: 1-13.
  • He, L., R. Kierzek, J. SantaLucia, Jr., A.E. Walter, D.H. Turner. 1991. Nearest-neighbor parameters for G.U mismatches. Biochemistry 30: 11124-11132.
  • Henegariu, O.N., A.S. Heerema, R. Dlouhy, G.H. Vance, P.H. Vogt. 1997. Multiplex PCR: critical parameters and step-by-step protocol. BioTechniques 23: 504-511.
  • Kim, J.E., R.E. Withler, C. Ritland, K.M. Cheng. 2004. Genetic variation within and between domesticated chinook salmon, Oncorhynchus tshawytscha, strains and their progenitor populations. Developments in Environmental Biology of Fishes 23: 371-378.
  • Lerceteau-Köhler, E, S. Weiss. 2006. Development of a multiplex PCR microsatellite assay in brown trout Salmo trutta, and its potential application for the genus. Aquaculture 258: 641-645.
  • Premier Biosoft, http://biocompute.bmi.ac.cn/MPprimer/primer_dimer.html (accessed June 2013).
  • Rai, A.J., N. Udar, R. Saad, M.A. Fleisher. 2009. Multiplex assay for detecting genetic variations in CYP2C9, VKORC1, and GGCX involved in warfarin metabolizm. Clinical Chemistry 4: 823-826.
  • Rexroad, C.E., R.L. Coleman, W.K. Hershberger, J. Killefer. 2002a. Eighteen polymorphic microsatellite markers for rainbow trout (Oncorhynchus mykiss). Animal Genetics 33: 76–78.
  • Rexroad, C.E., R.L. Coleman, W.K. Hershberger, J. Killefer. 2002b. Thirty-eight polymorphic microsatellite markers for mapping in rainbow trout. Journal of Animal Science 80: 541–542.
  • Rexroad, C.E., R.L. Coleman, A.L. Gustafson, W.K. Hershberger, J. Killefer. 2002c. Development of rainbow trout microsatellite markers from repeat enriched libraries. Marine Biotechnology 4: 12–16.
  • Roche. 1999. Optimization of Reactions to Reduce Formation of Primer Dimers. Roche Molecular Biochemicals Technical Note No. LC 1/99 http://www.gene-quantification.de/roche-primerdimer. pdf (accessed June 2013).
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-b6504b74-4007-4f7a-bd4a-2faa592df6d9
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.