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Building science gateways by utilizing the generic WS-PGRADE/gUSE workflow system

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Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
Enabling scientists to use remote distributed infrastructures, parametrize and execute common science-domain applications transparently is actual and a highly relevant field of distributed computing. For this purpose a general solution is the concept of Science Gateways. WS-PGRADE/gUSE system offers a transparent and web-based interface to access distributed resources (grids, clusters or clouds), extended by a powerful generic purpose workflow editor and enactment system, which can be used to compose scientific applications into data-flow based workflow structures. It’s a generic web-based portal solution to organize scientific applications in a workflow structure and execute them on remote computational resources. As the portal defines nodes as black-box applications uploaded by the users, it does not provide any application specific interface by default. In this paper we show what kind of tools, APIs and interfaces are available in WS-PGRADE/gUSE to customize it to have an application specific gateway.
Wydawca
Czasopismo
Rocznik
Strony
307--325
Opis fizyczny
Bibliogr. 23 poz, rys., tab.
Twórcy
autor
  • Laboratory of Distributed and Parallel Systems, MTA SZTAKI, Budapest, Hungary
autor
  • Laboratory of Distributed and Parallel Systems, MTA SZTAKI, Budapest, Hungary
autor
  • Centre for Parallel Computing, University of Westminster, London, United Kingdom
Bibliografia
  • [1] https://geodynamics.org/portals/seismo/ (accessed at 10.11.2012)
  • [2] Torterolo L, Porro I et al: Building Science Gateways with EnginFrame: a Life Science example. Proc. of International Workshop on Portals for Life Sciences, Edinburgh, United Kingdom, September 14–15, 2009
  • [3] Venuti N., Torterolo L. et al: A Service-Oriented Interface to the iRODS Data Grid. Proc. of the International Worshop on Science Gateways, Catania, Italy, September 20–21, 2010
  • [4] Hull D., Wolstencroft K. et al: Taverna: a tool for building and running workflows of services. Nucleic Acids Research, p. 34, 729–732, 2006
  • [5] Ludascher B., Altintas I. et al: Scientific workflow management and the Kepler system: Research Articles. Concurrency and Computation: Practice and Experience, 18(10): 1039–1065, 2006
  • [6] Bartocci E, Cacciagrano D et al.: A Grid infrastructure for managing workflows in bioinformatics applications. Proc. of the NETTAB2006, Santa Margherita, pp. 38–44. 2006
  • [7] Dziubecki P., Grabowski P. et al: Easy Development and Integration of Science Gateways with Vine Toolkit. Journal of Grid Computing, pp. 1–15, 26 October 2012
  • [8] Dziubecki P. et al: Nano-Science Gateway development with Vine Toolkit and Adobe Flex. Proc. of the International Worshop on Science Gateways, Catania, Italy, 2010
  • [9] Goodale T., Jha S. et al: SAGA: A Simple API for Grid Applications. Computational Methods in Science and Technology, 12(1): 7–20, 2008
  • [10] Lindemann J., Sandberg G.: An extendable GRID application portal. Advances in Grid Computing-EGC 2005, pp. 322–325, 2004
  • [11] Gubala T., Bubak M.: GridSpace – Semantic Programming Environment for the Grid . Parallel Processing and Applied Mathematics. vol. 3911, p. 172–179, Springer Berlin Heidelberg, 2006
  • [12] Ardizzone V., Barbera R. et al: The DECIDE Science Gateway. Journal of Grid Computing, pp. 1–19, 2011
  • [13] S. Gesing, I. Marton, et al.: Workflow Interoperability in a Grid Portal for Molecular Simulations. Proc. of the International Worshop on Science Gateways, Catania, Italy, September 20–21, 2010
  • [14] Kacsuk P.: P-GRADE portal family for Grid infrastructures. Concurrency and Computation: Practice and Experience, vol. 23, issue 3, pp. 235–245, 2012
  • [15] Kacsuk P., Farkas Z. et al.: WS-PGRADE/gUSE Generic DCI Gateway Frame-work for a Large Variety of User Communities. Journal of Grid Computing, vol. 9, no. 4, pp. 479–499, 2012
  • [16] Kozlovszky M., Karoczkai K. et al: Enabling generic distributed computing in- frastructure compatibility for workflow management systems. Computer Science, vol. 13, pp. 61–79, 2012
  • [17] gUSE portal package and source code: http://sourceforge.net/projects/guse/ (accessed at 19.08.2012).
  • [18] HP-SEE Portal: http://ls-hpsee.nik.uni-obuda.hu:8080/liferay-portal-6.0.5 (accessed at 19.08.2012)
  • [19] Becciani U., Costa A. et al: VisIVO: A Library and Integrated Tools for Large Astrophysical Dataset Exploration. Astronomical Data Analysis Software and Systems vol. 461, pp. 505, 2012
  • [20] Massimino P., Bandieramonte M. et al: Learning Astrophysics through Mobile Gaming . Astronomical data analysis software and systems XXII, Astronomical Society of the pacific, 2012
  • [21] Costa A., Becciani U. et al: VisIVOWeb: A WWW Environment for Large- Scale Astrophysical Visualization. Publications of the Astronomical Society of the Pacific, vol. 123, issue 902, pp. 503–513, 2011
  • [22] Autodock Portal: https://autodock-portal.sztaki.hu/ (accessed at 10.11.2012)
  • [23] Gesing, S., Herres-Pawlis, S. et.al.: A Science Gateway Getting Ready for Serving the International Molecular Simulation Community. Proc. of the EGI Community Forum 2012 / EMI Second Technical Conference, Munich, Germany, 26–30 March, 2012.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-b567dfe9-a68d-41a5-8d34-1ce29738e3af
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