A declarative query language for protein secondary structures

• Autorzy: Wieczorek D. , Małysiak-Mrozek B. , Kozielski S. , Mrozek D.
• Języki publikacji: EN

Abstrakty

EN

Searching proteins on their secondary structures provides a rough and fast method of identification of molecules having a similar fold. Since existing database management systems do not offer integrated exploration methods for querying protein structures, the structural similarity searching is usually performed by external tools. This often lengthens the processing time and requires additional processing steps, like adaptation of input and output data formats. In the paper, we present the extended SQL language, which allows searching a database in order to find proteins having secondary structures similar to the structural pattern specified by a user. Presented query language is integrated with the relational database management system and it simplifies the manipulation of biological data.

Słowa kluczowe

EN

proteins; secondary structure; protein similarity; query language

PL

proteiny; struktura drugorzędowa; podobieństwa białek; język zapytań

• Wydawca: University of Silesia, Institute of Informatics, Computer Systems Department
• Czasopismo: Journal of Medical Informatics & Technologies
• Rocznik: 2010
• Tom: Vol. 16
• Strony: 139--148
• Opis fizyczny: Bibliogr. 21 poz., rys.

Twórcy

autor

Wieczorek D.

• Institute of Informatics, Silesian University of Technology, Akademicka 16, 44-100 Gliwice, Poland

autor

Małysiak-Mrozek B.

autor

Kozielski S.

autor

Mrozek D.

Bibliografia

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