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The aim of this work was to develop an improved method for isolation and purification of genomic DNA from filamentous cyanobacteria. The method described here employs a modified phenol extraction-based procedure. It allowed us to obtain a high yield (60-620 μg/g wet weight, depending on the cyanobacterial strain) of pure and undegraded genomic DNA (A260/A280 ratio of about 1.8 and A260/A230 ratio of about 2.0). Genomic DNA, isolated from cyanobacteria belonging to the genera Anabaena, Nodularia and Nostoc has been successfully used for construction of gene libraries. Thus, this method can be used in procedures requiring highly purified cyanobacterial DNA.
Czasopismo
Rocznik
Tom
Strony
8--13
Opis fizyczny
Bibliogr. 16 poz., wykr.
Twórcy
autor
autor
autor
- Department of Molecular Biology, University of Gdańsk, Wita Stwosza 59, 80-308 Gdańsk, Poland, wegrzyn@biotech.univ.gda.pl
Bibliografia
- 1.Bertozzini, E., Penna, A., Pierboni, E., Bruce, I.J. and Magnani, M. (2005) Development of new procedures for the isolation of phytoplankton DNA from fixed samples. J Appl Phycol 17, 223-229.
- 2.Bollet, C., Gevaudan, M.J., de Lamballerie, X., Zandotti, C. and de Micco, P. (1991) A simple method for the isolation of chromosomal DNA from gram positive or acid-fast bacteria. Nucleic Acids Res 19, 1955.
- 3.Burja, A.M., Banaigs, B., Abou-Mansour, E., Burgess, J.G. and Wright, P.C. (2001) Marine cyanobacteria - a prolific source of natural products. Tetrahedron 57, 9347-9377.
- 4.Fiore, M.F., Moon, D.H., Tsai, S.M., Lee, H. and Trevors, J.T. (2000) Miniprep DNA isolation from unicellular and filamentous cyanobacteria. J Microbiol Meth 39, 159-169.
- 5.Hoiczyk, E. and Hansel, A. (2000) Cyanobacterial cell walls: news from an unusual prokaryotic envelope. J Bacteriol 182, 1191-1199.
- 6.Kennedy, J., Flemer, B., Jackson, S.A., Lejon, D.P.H., Morrissey, J.P., O'Gara, F. and Dobson, A.D.W. (2010) Marine metagenomics: new tools for the study and exploitation of marine microbial metabolism. Mar Drugs 8, 608-628.
- 7.Liberton, M. and Pakrasi, H.B. (2008) Membrane systems in cyanobacteria. In: The cyanobacteria: molecular biology, genomics and evolution eds. Herrero, A. and Flores, E., pp 277-285, Norwich: Caister Academic Press.
- 8.Manchester, K.L. (1995) Value of A260/A280 ratios for measurement of purity of nucleic acids. Biotechniques 19, 208-210.
- 9.Morin, N., Vallaeys, T., Hendrickx, L., Natalie, L. and Wilmotte, A. (2010) An efficient DNA isolation protocol for filamentous cyanobacteria of the genus Arthrospira. J Microbiol Meth 80, 148-154.
- 10.Pope, P.B. and Patel, B.K.C. (2008) Metagenomic analysis of a freshwater toxic cyanobacteria bloom. FEMS Microbiol Ecol 64, 9-27.
- 11.Saha, S.K., Uma, L. and Subramanian, G. (2005) An improved method for marine cyanobacterial DNA isolation. World J Microbiol Biotechnol 21, 877-881.
- 12.Sambrook, J. and Russell, D.W. (2001) Molecular cloning: a laboratory manual. 3rd edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press.
- 13.Sinha, S., Dadheech, P.K., KrishnaMo, M. (2009) Rapid DNA extraction from cyanobacteria. www.protocol-online.org. Date added: Feb 02, 2009
- 14.Sivonen, K. and Börner, T. (2008) Bioactive compounds produced by cyanobacteria. In: The cyanobacteria: molecular biology, genomics and evolution, eds. Herrero, A. and Flores, E. pp. 159-183, Norwich: Caister Academic Press.
- 15.Sivonen, K., Leikoski, N., Fewer, D.P. and Jokela, J. (2010) Cyanobactins-ribosomal cyclic peptides produced by cyanobacteria. Appl Microbiol Biotechnol 86, 1213-1225.
- 16.Wu, X., Zarka, A. and Boussiba, S. (2000) A simplified protocol for preparing DNA from filamentous cyanobacteria. Plant Mol Biol Rep 18, 385-392.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BUS8-0028-0060