Tytuł artykułu
Autorzy
Wybrane pełne teksty z tego czasopisma
Identyfikatory
Warianty tytułu
Języki publikacji
Abstrakty
The aim of this paper was a taxonomic verification of cyanobacteria of the genus Anabaena that occur in the Gulf of Gdańsk. Classical taxonomic methods were combined with modern molecular taxonomic methods (polyphasic approach). Analysis of the species diversity of cyanobacteria from the genus Anabaena was based on the microscopic analysis and on the analysis of 16S rRNA and ITS region. Comparison of the obtained results with sequences in GenBank showed 97.8-100% similarity for 16S rRNA and 98.8-100% similarity in the case of the ITS fragment. Similarity of the 16S rRNA and ITS sequence of 98.5% seems to be sufficient to determine the species.
Słowa kluczowe
Czasopismo
Rocznik
Tom
Strony
64--78
Opis fizyczny
Bibliogr. 73 poz., fot., tab., wykr.
Twórcy
autor
autor
autor
- Department of Marine Biology and Ecology Institute of Oceanography, University of Gdańsk Al. Piłsudskiego 46, 81-378 Gdynia, Poland, ocews@univ.gda.pl
Bibliografia
- 1.Anagnostidis, K. & Komárek, J. (1985). Modern approach to the classification system of Cyanophytes. 1. Introduction. Algol. Stud. 38(39): 291-302
- 2.Anagnostidis, K. & Komárek, J. (1999). Cyanoprokariota 1. Teil: Chroococcales, Süsswasserflora von Mitteleuropa 19: 548
- 3.Barker, G.L., Hayes, P.K. & O'Mahony, S. L. (1999). A molecular and phenotypic analysis of Nodularia (Cyanobacteria) from the Baltic Sea, J. Phycol. 35, 931-937
- 4.Beltran, E. C. & Neilan, B. A. (2000). Geographical segregation of theneurotoxin-producing cyanobacterium Anabaena circinalis. Appl Environ. Microbiol 66, 4468-4474.
- 5.Boom, R., Sol, C. J. A., Salimans, M. M. M., Jansen, C. L., Wertheim-van Dillen, P. M. E. & Van der Noordaa, J. (1990). Rapid and simple method for purification of nucleic acids. J. Clin. Microbiol. 28, 495-503
- 6.Boutte, C., Grubisic, S., Balthasart, P. & Wilmotte, A. (2006). Testing of primers for the study of cyanobacterial molecular diversity by DGGE. J. Microbiol. Meth. 65, 542-550
- 7.Castenholz, R. W. (2001) General characteristics of the cyanobacteria (pp. 474-487). In Boone, D. R., R. W. Castenholz (eds), Bergey's Manual of Systematic Bacteriology, 2nd edn. Vol. 1. - New York
- 8.El Semary N.A. & Hayes P.K. (2005). Complete sequence of gvpC gene for minor gas vesicle protein from some isolates of Anabaena lemmermannii and Anabaena solitaria, Submitted (JAN-2005) to the EMBL/GenBank/DDBJ databases, NUCLEOTIDE SEQUENCE. Unpublished. NCBI
- 9.Felsenstein, J. (1993). PHYLIP (Phylogeny Inference Package) version 3.5c, Distributed by the author, Department of Genetics, University of Washington, Seattle, (http://evolution.genetics.washington.edu/phylip.html)
- 10.Fergusson, K.M. & Saint, C. P. (2000). Molecular phylogeny of Anabaena circinalis and its identification in environmental samples by PCR. Appl. Environ. Microbiol. 66, 4145-4148
- 11.Garrity, G.M. & Holt, J.G. (2001). The road map to the Manual. In Bergey's Manual of Systematic Bacteriology (pp. 119-141). Springer, New York
- 12.Gkelis, S., Rajaniemi, P., Vardaka, E., Moustaka-Gouni, M., Lanaras, T. & Sivonen, K. (2005). Limnothrix redekei (Van Goor) (Cyanobacteria) strains from Lake Kastoria, Greece form a separate phylogenetic group. Microb. Ecol. 49, 176-182
- 13.Gugger, M., Lyra, C., Henriksen, P., Coute´, A., Humbert, J.-F. & Sivonen, S. (2002). Phylogenetic comparison of the cyanobacterial genera Anabaena and Aphanizomenon, Int. J. Syst. Evol. Microbiol. 52, 1867 - 1880
- 14.Hajdu, S., Höglander, H. & Larsson, U. (2007). Phytoplanktonvertical distributions and composition in Baltic Sea cyanobacterial blooms. Harmful Algae. 6, 187-205
- 15.Hindák, F., Šmarda J. & Komárek J. (2003). Nodularia moravica spec. nova, a new benthic freshwater nostocalean species (Cyanophyta/Cyanobacteria/Cyanoprokaryota). Algol. Stud. 109, 241 - 253
- 16.Hongmei, J., Aitchison, J. C., Lacap, D. C., Peerapornpisal, Y., Sompong, U. & Pointing, S. B. (2005). Community phylogenetic analysis of moderately thermophilic cyanobacterial mats from China, the Philippines and Thailand. Extremophiles. 9, 325 - 32
- 17.Iteman, I., Rippka, R., Tandeau de Marsac N. & Herman, M. (2002). rDNA analyses of planktonic heterocystous cyanobacteria, including members of the genera Anabaenopsis and Cyanospira. Microbiol. 148, 481- 496
- 18.Janse, I., Meima, M., Kardinaal, W. E. A. & Zwart G. (2003). High-resolution differentiation of cyanobacteria by using rRNA-Internal Transcribed Spacer Denaturing Gradient Gel Electrophoresis. Appl. Environ. Microbiol. 69, 6634-6643
- 19.Johansen, J. R. & Casamatta, D. A. (2005). Recognizing cyanobacterial diversity through adoption of a new species paradigm. Algol. Stud. 117, 71-93
- 20.Kearns, K. D. & Hunter, M. D. (2001). Toxin-producing Anabaena flos-aquae induces settling of Chalmidomonas reinhardtii, a competing motile alga. Microbiol. Ecol. 42, 80-86
- 21.Kobos, J. (2008). Charakterystyka toksycznych gatunków cyjanobakterii występujących w wodach Zatoki Gdańskiej i wybranych jeziorach zlewni Raduni (pp. 1-160). Ph. D. dissertation, Gdańsk: University of Gdansk
- 22.Komárek J. & Anagnostidis K. (1989). Modern approach to the classification system of Cyanophytes, 4 - Nostocales. Archiv für Hydrobiologie/ Algol. Stud. 56, 247-345
- 23.Komárek, J. & Zapomělová E. (2007) Planktic morphospecies of the cyanobacterial genus Anabaena = subg. Dolichospermum - 1. part: coiled types. Fottea 7, 1-31
- 24.Kozhevnikov, I. V. & Kozhevnikova, N. A. (2009). Observations on morphology of Anabaena sedovii Kossinsk. (Nostocales, Cyanobacteria) isolated from the Yenissei River (East Siberia, Russia). Fottea 9, 49-51
- 25.Laamanen, M. J., Forsström, L. & Sivonen, K. (2002) Diversity of Aphanizomenon flos-aquae (Cyanobacterium) populations along a Baltic Sea salinity gradient. Appl. Environ. Microbiol. 68, 5296-5303
- 26.Lakowitz, K. (1907). Die Algenflora der Danziger Bucht. Kommissionverlag von W. Engelmann (pp. 1-154). Leipzig,
- 27.Lang, N. J, Krupp, J. M. & Koller, A. L. (1987). Electron micrograph of Anabaena variabilis ATCC 29413, J. Bacteriol. 169, 920-923
- 28.Lehtimäki, J., Lyra, C., Suomalainen, S., Sundman, P., Rouhiainen, L., Paulin, L., Salkinoja-Salonen, M. & Sivonen, K. (2000). Characterization of Nodularia strains, cyanobacteria from brackish waters, by genotypic and phenotypic methods. Int. J. Syst. Evol. Microbiol. 50, 1043-1053
- 29.Li, R. & Watanabe, M. (2000). Taxonomic studies of planktic species of Anabaena based on morphological characteristics in cultured strains. Hydrobiologia 438, 117-138
- 30.Ludwig, W. & Klenk, H. P. (2001) Overview: a phylogenetic backbone and taxonomic framework for procaryotic systematics. In Bergey's Manual of Systematic Bacteriology (pp. 49-65). Springer, New York
- 31.Luft, J. H. (1961). Improvements in epoxy resin embedding methods. J. Biophys. Biochem. Cytol. 9, 409-414
- 32.Lyra, C., Suomalainen, S., Gugger, M., Vezie, C., Sundman, P., Paulin, L. & Sivonen K. (2001). Molecular characterization of planktic cyanobacteria of Anabaena, Aphanizomenon, Microcystis and Planktothrix genera. Int. J. Syst. Evol. Microbiol. 51, 513-526
- 33.Lyra, C., Laamanen, M., Lehtimäki, J. M., Surakka, A. & Sivonen, K. (2005). Benthic cyanobacteria of the genus Nodularia are non-toxic, without gas vacuoles, able to glide and genetically more diverse than planktonic Nodularia. Int. J. Syst. Evol. Microbiol. 55, 555-568
- 34.Mazur-Marzec, H., Krężel A., Kobos J. & Pliński M. (2006). Toxic Nodularia spumigena blooms in the coastal waters of the Gulf of Gdansk: a ten-year survey. Oceanologia 48, 255-273
- 35.Mischke, U. (2003). Cyanobacteria associations in shallow polytrophic lakes: influence of environmental factors. Acta Oecol. 24, 11-23
- 36.Muyzer, G., De Vall E. C. & Uitierlinden A. G. (1993). Profiling of complex microbial populations by Denaturing Gradient Gel Electrophoresis analysis of Polymerase Chain Reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 3, 695-700
- 37.Nayak, S., Prasanna, R., Prasanna, B. M. & Sahoo, D. B. (2007). Analysing diversity among Indian isolates of Anabaena (Nostocales, Cyanophyta) using morphological, physiological and biochemical characters. World J. Microb. Biot. 9, 1575-1584
- 38.Neilan, A. B. (2002). The molecular evolution and DNA profiling of toxic cyanobacteria. Curr. Issues Mol. Biol. 4, 1-11
- 39.Nübel, U., Garcia-Pichel, F. & Muyzer, G. (1997). PCR primers to amplify 16S rRNA genes from cyanobacteria. Appl. Environ. Microbiol. 63, 3327-3332
- 40.Oikawa, E. & Ishibashi, Y. (2001). Anabaena spiroides NIES76 16S rRNA gene, Published Only in Database.
- 41.Palińska, K. A. & Surosz, W. (2008). Population of Aphanizomenon from the Gulf of Gdańsk (Southern Baltic Sea): differences in phenotypic and genotypic characteristics. Hydrobiologia 607, 163-173
- 42.Pliński, M. & Jóźwiak, T. (1999). Temperature and N:P ratio as factors causing blooms in the Gulf of Gdansk and surrounding area, Oceanol. St. 1: 39-44
- 43.Pliński, M. & Komárek J. (2007). Flora Zatoki Gdańskiej i wód przyległych. Sinice-Cyanobakterie (Cyanoprokariota) Gdańsk: Wydawnictwo Uniwersytetu Gdańskiego
- 44.Prakash, O., Verma, M., Sharma, P., Kumar, M., Kumari, K., Singh, A., Kumari H., Jit, S., Gupta, S. K., Khanna M. & Lal R. (2007). Polyphasic approach of bacterial classification - An overview of recent advances. Int. J. Microbiol. 47, 98-108
- 45.Rajaniemi, P., Hrouzek, P., Kastowska, K., Willami, R., Kantala, A., Hoffmann, L., Komárek, J. & Sivonen, K. (2005) Phylogenetic and morphological evaluation of the genera Anabaena, Aphanizomenon, Trichormus and Nostoc (Nostocales, Cyanobacteria). Int. J. Syst. Evol. Microbiol. 55,11-26
- 46.Rapala, J. & Sivonen, K. (1998). Assessment of environmental conditions that favor hepatotoxic and neurotoxic Anabaena spp. strains cultured under light limitation at different temperatures. Microbial Ecol. 36, 181-192
- 47.Rippka, R., Castenholz, R.W. & Herdman, M. (2001). Subsection IV. (Formerly Nostocales Castenholz 1989b sensu Rippka, Deruelles, Waterbury, Herdman and Stanier 1979). In Bergey's Manual of Systematic Bacteriology (pp. 562-566) 2nd edn, vol. 1, Springer, New York
- 48.Rudi, K., Larsen F. & Jakobsen, K. S. (1997). Strain characterization and classification of oxyphotobacteria in clone culture on the basis of 16S rRNA sequences from the variable regions V6, V7 and V8. Appl. Environ. Microbiol. 63, 2593-2599
- 49.Rudi, K., Skulberg, O. & Jakobsen, K. (2000). Application of sequence-specific labeled 16S rRNA gene oligonucleotide probes for genetic profiling of cyanobacterial abundance and diversity by array hybridization. Appl. Environ. Microbiol. 66, 4004-4011
- 50.Sáez A. G. & Lozano E. (2005). Body doubles. Cryptic species: as we discover more examples of species that are morphologically indistinguishable, we need to ask why and how they exist. Nature 433, 111
- 51.Sainis, I. & Vareli, K. (2006). Molecular characterization of the cyanobacterial community of Lake Pamvotis. Unpublished
- 52.Settanni, L., Valmorri, S., van Sinderen, D., Suzzi, G., Paparella, A. & Corsetti, A. (2006). Combination of multiplex PCR and PCR-Denaturing Gradient Gel Electrophoresis for monitoring common sourdough-associated Lactobacillus species. Appl. Environ. Microbiol. 72, 3793-3796
- 53.Sivonen, K., Halinen K., Sihvonen, L. M., Koskenniemi, K., Sinkko,H., Rantasärkkä, K., Moisander P. H. & Lyra Ch. (2007). Bacterial diversity and function in the Baltic Sea with an Emphasis on Cyanobacteria. Ambio. 36, 180-185
- 54.Skotarczak, B. & Cichocka, A. (2001). Isolation and amplification by polymerase chain reaction DNA of Babesia microti and Babesia divergens in ticks in Poland. Ann. Agric. Environ. Med. 8, 187-189
- 55.Skotarczak, B., Rymaszewska, A., Wodecka, B. & Sawczak, M. (2003). Molecular evidence of coinfection of Borrelia burgdorferi sensu lato, human granulocytic ehrlichiosis agent and Babesia microti in ticks from northwestern Poland. J. Parasitol. 8, 194-196
- 56.Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44, 846-849
- 57.Stackebrandt, E., Koch, C., Gvozdiak O. & Schumann, P. (1995). Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend. Int. J. Syst. Bacteriol. 45, 682-692
- 58.Stackebrandt, E., Frederiksen, W., Garrity, G. M., Grimont, P. A. D., Kämpfer, P., Maiden, M. C. J., Nesme, X., Rosselló-Mora, R., Swings, J., Trüper, H. G., Vauterin, L., Ward, A. C & Whitman, W. B. (2002). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology, Int. J. Syst. Evol. Microbiol. 52, 1043-1047
- 59.Stackebrandt, E Spring, S., Merkhoffer, B., Weiss, N., Kroppenstedt, R. M. & Hippe, H. (2003). Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramienseas, Clostridium estertheticum subsp. Laramiense subsp. Int. J. Syst. Evol. Microbiol. 53, 1019-1029
- 60.Stackebrandt, E., Kroppenstedt, R. M., Wink, J. M. & Schumann, P. (2004), Reclassification of Amycolatopsis orientalis subsp. lurida Lechevalier et al. 1986 as Amycolatopsis lurida sp. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 54, 267-268
- 61.Stackebrandt, E. & Ebers E. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol. Today 33, 152-155
- 62.Starmach, K. (1966). Flora słodkowodna Polski, 2, Cyanophyta- sinice, Glaucophyta-glaukofity. Warszawa: PWN
- 63.Stulp, B. K. & Stam, W. T. (1985). Taxonomy of the genus Anabaena (Cyanophyceae) based on morphological and genotypic criteria. Arch. Hydrobiol. Suppl. 71, 257-268
- 64.Surosz, W. & Palińska, K. A. (2004). Effects of heavy-metal stress on cyanobacterium Anabaena flos-aquae. Arch. Environ. Contam. Toxicol. 48, 40-48
- 65.Tamura, K., Dudley, J., Nei, M., & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599
- 66.Taton, A., Grubisic, S., Brambilla, E., De Wit, R. & Wilmotte, A. (2003). Cyanobacterial diversity in natural and artificial microbial mats of Lake Fryxell (McMurdo Dry Valleys, Antarctica): a morphological and molecular approach. Appl. Environ. Microbiol. 69, 5157-5169
- 67.Tuji, A. & Niiyama Y. (2010). Phylogenetic study by the morphological and molecular analyses of japanese planktic Anabaena species. Bull. Natl. Mus. Nat. Sci., Ser. B 32, 71-80
- 68.Vaitomaa, J., Rantala A., Halinen, K., Rouhiainen, L., Tallberg, P., Mokelke, L.& Sivonen, K. (2003). Quantitative real-time PCR for determination of microcystin synthetase E copy numbers for Microcystis and Anabaena in lakes. Appl. Environ. Microbiol. 69: 7289-7297
- 69.Wacklin, P., Hoffmann, L. & Komárek, J. (2009). Nomenclatural validation of the genetically revised cyanobacterial genus Dolichospermum (Ralfs ex Bornet et Flahault) comb. nova. Fottea 9, 59-64
- 70.Ward, D. M. (2006). Microbial diversity in natural environments: focusing on fundamental questions. A Van Leeuw. 90, 309-324.
- 71.Willame, R., Boutte C., Grubisic, S., Wilmotte, A., Hoffmann, L. & Komárek, J., (2006). Morphological and molecular characterization of planktonic cyanobacteria from Belgium and Luxembourg. J. Phcol. 42, 1312-1332
- 72.Wilmotte A. & Golubić S. (1991). Morphological and genetic criteria in the taxonomy of Cyanophyta/ Cyanobacteria. Archiv für Hydrobiologie/ Algological Studies 3, 1-24
- 73.Zapomělová, E., Řeháková, K., Jezberowá, J. & Komárkowá, J. (2010). Polyphasic characterization of eight planktonic Anabaena strains (Cyanobacteria) with reference to the variability of 61 Anabaena populations observed in the field. Hydrobiologia 639, 99-113
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BUS8-0021-0044