PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
Tytuł artykułu

Characterizing DNA Bond Shapes Using Trajectories

Autorzy
Wybrane pełne teksty z tego czasopisma
Identyfikatory
Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
We consider the use of DNA trajectories to characterize DNA bond shapes. This is an extension of recent work on the bond-free properties of a language. Using a new definition of bondfreeness, we show that we can increase the types of DNA bond shapes which are expressible. This is motivated by the types of bond shapes frequently found in DNA computing. We examine the algebraic properties of sets of DNA trajectories. In particular, we consider rotation of trajectories and weakening of the bonding conditions expressed by a set of DNA trajectories. We also consider decidability results for bond-freeness with respect to our definition.
Słowa kluczowe
Wydawca
Rocznik
Strony
269--285
Opis fizyczny
bibliogr. 16 poz., wykr.
Twórcy
Bibliografia
  • [1] Adleman, L.: Molecular Computation of solutions to combinatorial problems, Science, 266, 1994, 1021-1024.
  • [2] Amos, M.: Theoretical and Experimental DNA Computation, Springer, 2005.
  • [3] Domaratzki, M.: Characterizing DNA bond shapes using trajectories, Developments in Language Theory (O. Ibarra, Z. Dang, Eds.), Lecture Notes in Computer Science 4036, Springer, 2006.
  • [4] Domaratzki, M.: Hairpin Structures defined by DNA Trajectories, DNA 12 (C. Mao, T. Yokomori, Eds.), Lecture Notes in Computer Science 4287, Springer, 2006.
  • [5] Harju, T., Karhumäki, J.: Morphisms, Handbook of Formal Languages, Vol. I, 1997.
  • [6] Hussini, S., Kari, L., Konstantinidis, S.: Coding properties of DNA languages, Theor. Comp. Sci., 290(3), 2002, 1557-1579.
  • [7] Jonoska, N., Kephart, D., Mahalingam, K.: Generating DNA code words, Congressus Numerantium, 156, 2002, 99-110.
  • [8] Kari, L., Kitto, R., Thierrin, G.: Codes, involutions and DNA encoding, Formal and Natural Computing (W. Brauer, H. Ehrig, J. Harumäki, A. Salomaa, Eds.), Lecture Notes in Computer Science 2300, Springer, 2003.
  • [9] Kari, L., Konstantinidis, S., Losseva, E., Sosík, P., Thierrin, G.: Hairpin Structures in DNA Words, DNA Computing (A. Carbone, N. Pierce, Eds.), Lecture Notes in Computer Science 3892, Springer, 2006.
  • [10] Kari, L., Konstantinidis, S., Losseva, E., Wozniak, G.: Sticky-free and overhang-free DNA languages, Acta Inform., 40, 2003, 119-157.
  • [11] Kari, L., Konstantinidis, S., Sosík, P.: Bond-free Languages: Formalisms, Maximality and Construction Methods, Int. J. Found. Comp. Sci., 16, 2005, 1039-1070.
  • [12] Kari, L., Konstantinidis, S., Sosík, P.: On properties of bond-free DNA languages, Theor. Comp. Sci., 334, 2005, 131-159.
  • [13] Kari, L., Konstantinidis, S., Sosík, P., Thierrin, G.: On hairpin-free words and languages, Developments in Language Theory: 9th International Conference (C. Felice, A. Restivo, Eds.), Lecture Notes in Computer Science 3572, Springer, 2005.
  • [14] Mateescu, A., Rozenberg, G., Salomaa, A.: Shuffle on trajectories: Syntactic constraints, Theor. Comp. Sci.,197, 1998, 1-56.
  • [15] Păun, G., Rozenberg, G., Salomaa, A.: DNA Computing: New Computing Paradigms, Springer, 1998.
  • [16] Rozenberg, G., Salomaa, A., Eds.: Handbook of Formal Languages, Springer, 1997.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BUS5-0018-0040
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.