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A novel polymorphic mtDNA marker for population studies of the pink shrimp, Farfantepenaeus duorarum (Crustacea, Penaeidae)

Identyfikatory
Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
The pink shrimp, Farfantepenaeus duorarum, is one of the most important shrimp species commercially harvested along the Gulf and Atlantic coasts of the US. In this study we developed a mitochondrial marker suitable for population studies of the species. A 611-617 bp hypervariable portion of the AT-rich region of the mt genome was amplified and sequenced. The 617 bp long consensus sequence contained 15 polymorphic insertion/deletion sites and 165 polymorphic substitution sites. Kimura 2-parameter distances ranged from 0.00 to 0.06 with a mean of 0.02. Among the 104 sequences, 100 haplotypes were counted if all mutations were included. If transitions were omitted, 34 haplotypes were observed. The results indicate that the hypervariable portion of the AT-rich region may be an effective marker for revealing the genetic structure of the pink shrimp off the southeast US.
Czasopismo
Rocznik
Strony
147--151
Opis fizyczny
Bibliogr. 13 poz.
Twórcy
autor
  • Department of Invertebrate Zoology & Hydrobiology, University of Łódź, Banacha 12/16, PL-90-237 Łódź, Poland
autor
  • Gulf Coast Research Laboratory, University of Southern Mississippi, College of Marine Sciences, P.O. Box 7000, Ocean Springs, MS 39566-7000
autor
  • Gulf Coast Research Laboratory, University of Southern Mississippi, College of Marine Sciences, P.O. Box 7000, Ocean Springs, MS 39566-7000
Bibliografia
  • [1] Amos B., Hoelzel A. R., 1991, Long-term preservation of whale skin for DNA analysis, Rep. Int. Whal. Comm., Spec. Iss. No. 13, 99-103.
  • [2] Altschul S. F, Gish W., Miller W., Myers E. W. & Lipman D. J., 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403-410.
  • [3] Avise J. C., 1994, Molecular markers, natural history and evolution, Chapman and Hall, New York, 511 pp.
  • [4] Crozier R. H., 1997, Preserving the information content of species: Genetic diversity, phylogeny, and conservation worth, Ann. Rev. Ecol. Syst., 28, 243-68.
  • [5] Grabowski M., Stuck K. C., 1999, Structure and intraspecific variability of the control region mtDNA in the pink shrimp, Farfantepenaeus duorarum (Decapoda, Penaeidae), [in:] Crustaceans and the biodiversity crisis, Vol. I, pp. 333-344, F.R. Schram & J.C. von Vaupel Klein (eds.), Brill Acad. Publ., Leiden.
  • [6] Gracia A., 1995, Impact of artisanal fishery on production of the pink shrimp Penaeus (Farfantepenaeus) duorarum Burkenroad, 1939, Cien. Mar., 21 (3), 342-359.
  • [7] Higgins D. G., Sharp P. M., 1988, Clustal: a package for performing multiple sequence alignment on a microcomputer, Gene, 73, 237-244.
  • [8] Navarette A., Garduno H., Gracia A., 1995, La pesqueria de camarón en alta mar: golfo de México y Caribe mexicano, [in:] Pesquerias relevantes de México, Tomo I, pp. 37-71, Instituto Nacional de la Pesca, Mexico.
  • [9] Ovenden J. R., 1990, Mitochondrial DNA and marine stock assessment: A review, Austr. J. Mar. Fresh. Res., 41 (6), 835-53.
  • [10] Sambrook J., Fritsch E. J., Maniatis T., 1989, Molecular cloning. A laboratory manual, 2nd edn., Cold Spring Harbor Lab. Press, Cold Spring Harbor, New York.
  • [11] Secretaria de Pesca (SdP), 1988, Annuario estadistico de pesca 1986, Direction Gral de Informática, Estadistica y Documentación, Secretaria de Pesca, Mexico.
  • [12] Schneider S., Kueffer J. M., Roessli D., Excoffier L., 1997, Arlequin version 1.1: a software for population genetic data analysis, Genetics and Biometry Lab., Univ. Geneva (Switzerland).
  • [13] Southeast Fisheries Science Center (SEFSC), 1993, Status of fishery resources of the southeastern United States for 1992, NOAA Tech. Memo. No. NMFS-SEFSC-326, 1-89.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BUS5-0011-0055
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