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An Automata Description of the Genetic Message Translation

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Języki publikacji
EN
Abstrakty
EN
In this paper we present the genetic message translation in terms of automata, transformation semigroups, restricted direct product and cascade product. We give a description of the alphabets and words involved in the processes of transcription and translation. We define a Mealy automata for the translation process, providing its detailed coverings by simpler machines. This leads to an interesting structural representation of the proteins.
Wydawca
Rocznik
Strony
93--107
Opis fizyczny
Bibliogr. 14 poz., rys., tab.
Twórcy
autor
  • Institute of Computer Science, Romanian Academy, Iasi, Romania
autor
  • Institute of Computer Science, Romanian Academy, Iasi, Romania
Bibliografia
  • [1] B.Alberts, A.Johnson, J.Lewis, M.Raff, K.Roberts, P.Walter, Molecular Biology of the Cell. Garland Publisher, 4th edition, 2002.
  • [2] Y.Benenson, B.Gil, U.Ben-Dor, R.Adar, E. Shapiro. An autonomous molecular computer for logical control of gene expression. Nature 429 (2004) 423-429.
  • [3] L.Cardelli. Languages and notations for systems biology. Unconventional Programming Paradigms, Invited talk, Le Mount St.Michel, 2004.
  • [4] H.de Jong. Modelling and Simulation of Genetic Regulatory Systems: A Literature Review, J. of Computational Biology 9 (2002) 67-103.
  • [5] S.Eilenberg. Automata, Languages and Machines, vol. B, Academic Press, New York, 1976.
  • [6] W.M.L.Holcombe. Algebraic Automata Theory, Cambridge University Press, 1982.
  • [7] H.Kitano. Computational Systems Biology. Nature 420 (2002) 206-210.
  • [8] K.Krohn, J.Rhodes. Algebraic theory of machines. I. Prime decomposition theorem for finite semigroups and machines, Trans. Amer. Math. Soc. 116 (1965) 450-464.
  • [9] S.Marcus. Linguistic structures and generative devices in molecular genetics. Cahiers de Ling. Theor. et Appl. 11 (1974) 77–104.
  • [10] S.Marcus. Language at the crossroad of computation and biology. In Computing with Bio-molecules: Theory and Experiments (P˘aun, Gh., ed.), Springer (1998) 1–35.
  • [11] S.Marcus. The Duality of Patterning in Molecular Genetics. In Aspects of Molecular Computing (N.Jonoska, Gh.P˘aun, G.Rozenberg, Eds.), LNCS 2950, Springer (2004), 318–321.
  • [12] Gh.Păun, G.Rozenberg, A.Salomaa. DNA Computing. New Computing Paradigms, Springer, Berlin, 1998.
  • [13] Gh.Păun, Membrane Computing. An Introduction, Springer, Berlin, 2002.
  • [14] J.D.Watson, F.H.C.Crick. A Structure for Deoxyribonucleic Acid, Nature 171 (1953) 737-738.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BUS2-0005-0114
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