PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
Tytuł artykułu

Chemiczna synteza oligorybonukleotydów

Autorzy
Identyfikatory
Warianty tytułu
EN
Chemical synthesis of oligoribonucleotides
Języki publikacji
PL
Abstrakty
EN
Basic issues and problems of chemical synthesis of oligoribonucleotides are presented. The paper describes three methods for construction of oligonucleotide chains: (1) a triester method which involves activation of nucleoside phosphodiesters with different azole sulfonates, and currently widely used methods employing PIII synthetic intermediates: (2) a phosphoramidite method which makes use of activation of nucleoside phosphoramidites by weakly acidic azoles or azole salts, (3) an H-phosphonate method, which uses nucleoside H-phosphonates activated by acid chlorides, both PIII intermediates are applied mainly in solid-support synthetic methodology. Problems of choosing appropriate protecting group for the synthesis are discussed. The article presents properties of basic types of protecting groups for lactam, exo-amino (base-labile protection), and hydroxyl groups (acid-labile for 5' protection, acid- or specific reagent-labile for 2' protection). The problem of 2'OH protection is described in detail. In this respect acid-labile groups and alkylsilyl groups are compared and their advantages and disadvantages are discussed. More detailed discussion is devoted to the phenomenon of the silyl group migration during the synthesis of monomeric units for oligonucleotide chain assembly. Basing on the NMR study of the isomerisation reaction it was possible to determine limits of safety of the reaction conditions.
Słowa kluczowe
Rocznik
Strony
255--277
Opis fizyczny
schem., bibliogr. 69 poz.
Twórcy
autor
  • Wydział Chemii Uniwersytetu im. A.Mickiewicza, ul. Grunwaldzka 6, 60-780 Poznań
  • Wydział Chemii Uniwersytetu im. A.Mickiewicza, ul. Grunwaldzka 6, 60-780 Poznań
Bibliografia
  • [1] J.D Watson, F.H.C. Crick, Nature, 1953, 171, 737.
  • [2] (a) W. Saenger, Principles o f Nucleic Acids Structure, Springer, Berlin, Heidelberg 1984; (b) Nucleic Acids in Chemistry and Biology, ed. G.M. Blackburn, M.J. Gait, Oxford University Press, Oxford 1996 (II wyd.); (c) R.T. Batey, R.P. Rambo, J.A. Doudna, Angew. Chem. Int. Ed., 1999, 38, 2326; (d) N. Tounekti, M. Mougel, C. Roy, R. Marquet, J.L. Darlix, J. Paoletti, B. Ehresmann, C. Ehresmann, J. Mol. Biol., 1992, 223, 205; (e) P.B. Moore, Annu. Rev. Biochem., 1999, 68, 287; (f) I. Tinoco Jr.., C. Bustamante, J. Mol. Biol., 1999, 293, 271.
  • [3] J. Sambrook, E.R Fritsch, T. Maniatis, Molecular Cloning, A Laboratory M anual, II ed., Cold Spring Harbor Laboratory Press, New York 1989.
  • [4] (a) Applied Antisense Oligonucleotide Technologies, ed. C.A. Stein, A.M. Krieg, Wiley-Liss, New York 1998; (b) M. McCoy, C&N News, 2001, 79(39), 22.
  • [5] (a) T. Cech, Curr. Opin. Struct. Biol., 1992, 2, 605; (b) Y. Takagi, M. Warashina, W.J. Stec, K. Yoshinari, K. Taira, Nucleic Acids Res., 2001, 29, 1815.
  • [6] (a) A.M. Młchelson, A.R. Todd, J. Chem. Soc.. 1955, 2632; (b) R.L. Letsinger, V. Mahaderan, J. Am. Chem. Soc., 1965, 87, 3526; (c) C.B. Reese, R. Safhill, Chem. Comm., 1968, 767; (d) J.C. Catlin, F. Cramer, J. Org. Chem., 1973, 38, 245.
  • [7] H.G. Khorana. Science, 1979, 203. 614.
  • [8] (a) M. Gellert, Proc. Natl. Acad. Sci. USA. 1967,57.148; (b) B. Weiss, C.C. Richardson. Proc. Natl. Acad. Sci. USA 1967, 57, 1201; (c) B.M Oliveira, I.R. Lehman, Proc. Natl. Acad. Sci. USA, 1967, 57, 1426.
  • [9] (a) C.P. Bahl, R. Wu, K. Itakura, N. Katagiri. S.A. Narang, Proc. Natl. Acad. Sci. USA, 1976, 73, 91; (b) S.A. Narang, Tetrahedron 1983, 39, 3.
  • [10] (a) K. Itakura, T. Hirose, R. Créa, A.D. Riggs, H.L. Heynekar, F. Bolivar, H.W. Boyer, Science, 1977,198, 1056; (b) D.V. Goeddel, D.G. Kleid, F. Bolivar, H.L. Heynekar, D.C. Yansura, T. Hirose, R. Créa, A. Kraszewski, K. Itakura. A.D. Riggs, Proc. Natl. Acad. Sci. USA. 1979, 76, 106.
  • [11] F. Wegenmayer, Angew. Chem. Int. Ed. Engl., 1983, 22, 842.
  • [12] Słowo „synton” jest tu użyte niezgodnie ze znaczeniem nadanym przez twórcę tego terminu, Seebacha (Angew. Chem. 1979, 91, 259, lnt. Ed. 18, 239). W tym nieprawidłowym znaczeniu jest jednak powszechnie używane wśród badaczy zajmujących się chemiczną syntezą oligonukleotydów. Wynika to prawdopodobnie z braku równie dogodnego zamiennika. W niniejszym tekście to określenie będzie używane w cudzysłowie.
  • [13] (a) W.Z. Antkowiak, P. Dembek, J. Milecki, P. Świderski, K. Węcławek, M. Wiewiórowski, Bull. Acad. Pol. Sci. Ser Chim., 1980, XXVIII, 537; (b) V. Amamath, A.D. Broom, Chem. Rev., 1977, 77, 183; (c) W.L. Sung, S.A. Narang, Can J. Chem., 1982 60, 111; (d) M. Ichiba, R. Charubala, R.S. Varma, W. Pfleiderer, Helv. Chim. Acta, 1986, 69, 1768.
  • [14] R.B. Merrifield, Advan. Enzymol., 1969, 32, 221.
  • [15] V. Amamath. A.D. Broom. Chem. Rer.\. 1977, 77. 183.
  • [16] (a) M.D. Matteucci, M.H. Caruthers, J. Am. Chem. Soc., 1981, 103, 3185; (b) G.R. Gough, M J. Brunden, P.T. Gilham, Tetrahedron Lett., 1981, 22, 4177; (c) S.P. Adams, P.S. Kavka, E J. Wykes, S.B. Holder, G.R. Galluppi, J. Am. Chem. Soc., 1983, 105, 661.
  • [17] R.T. Pon, N. Usman, K.K. Ogilvie, Biotechniques, 1988, 6, 768.
  • [18] (a) P. Wright, D. Lloyd, W. Rapp, A. Andrus, Tetrahedron Lett., 1993, 34, 3373; (b) C. McCollum, A. Andrus, Tetrahedron Lett., 1991, 32, 4069.
  • [19] H. Gao, B.L. Gaffney. R.A. Jones, Tetrahedron Lett., 1991, 32, 5477.
  • [20] C.L. Scremin, G.M. Bonora, Tetrahedron Lett., 1993, 34, 4663.
  • [21] W.J. Stec, G. Zon, Tetrahedron Lett., 1984, 25, 5275.
  • [22] (a) N. Katagiri, K. Itakura, S.A. Narang, Chem. Comm., 1974, 326; (b) J. Stawiński, T. Hozumi, S.A. Narang, Can. J. Chem., 1976, 54, 670.
  • [23] (a) C.B. Reese, A. Ubasawa, Nucl. Acids Res. Symp. Ser. No 7, 1980, 5; (b) W.L. Sung, S. A. Narang, Can. J. Chem., 1982. 60, 111.
  • [24] (a) R.L. Letsinger, W.B. Lunsford, J. Am. Chem. Soc., 1976, 98, 3655; (b) K.K. Ogilvie, N. Thierault, K.L. Sadana, J. Am. Chem. Soc., 1977, 99, 7741.
  • [25] (a) S.L. Beaucage, M.H. Caruthers, Tetrahedron Lett., 1981, 22,1859; (b) N.D. Sinha, J. Biernat, H. Koster, Tetrahedron Lett., 1983, 24, 5843.
  • [26] S.L. Beaucage, R.P. Iyer, Tetrahedron, 1992, 38, 2223.
  • [27] B.H. Dahl, L Nielsen, O. Dahl, Nucleic Acids Res., 1987, 15, 1729.
  • [28] (a) R. Vinayak. F. Colonna, D. Tsou, B. Mullah, A. Andrus, B. Sproat, Nucleic Acids Symp. Ser., 1994, 31, 165; (b) C. Vergeese, J. Carter, J. Yegge, S. Krivjansky, A. Settle, E. Kropp, K. Peterson, W. Pieken. Nucleic Acids Res., 1998, 26, 1046.
  • [29] (a) Y. Hayakawa, M. Kataoka, R. Noyori, J. Org. Chem., 1996, 61, 7996; (b) Y. Hayakawa, R. Kawai, A. Hirota, J.I. Sugimoto, M Kataoka, A. Sakakura, M. Hirose, R. Noyori, J. Am. Chem. Soc., 2001,123, 8165.
  • [30] (a) P.J. Garegg. I. Lindh, T. Regberg, J. Stawiński. R. Stromberg, Tetrahedron Lett., 1986.27, 4051,4055, (b) RJ. Garegg, T. Regberg, J. Stawiński, R. Stromberg, Chem. Scr., 1986, 26, 59; (c) B.C Froehler, RG. Ng, M.D. Matteucci, Nucleic Acids Res., 1986,14, 5399.
  • [31] R. Stromberg, J. Stawiński, A. Kraszewski, Nucleic Acids Symp. Ser., 1987, 185.
  • [32] M. Sobkowski, J. Stawiński, A. Sobkowska, A. Kraszewski, J. Chem. Soc. Perkin Trans I. 1994, 1803.
  • [33] Current Protocols in Nucleic Acids Chemistry. Wiley&Sons, rozdz. 2 i 3, 2000.
  • [34] Oligonucleotide Synthesis. A Practical Approach, Ed. M.J. Gait, IRL Press Ltd, Oxford 1984.
  • [35] C.B. Reese, A. Ubasawa, Tetrahedron Lett., 1980, 21, 2265.
  • [36] K J. Divakar, C.B. Reese, J. Chem. Soc. Perkin Trans. 1, 1982, 1171; (b) W.L. Sung, J. Org. Chem., 1982, 47, 3623; (c) P.K. Bridson, W. Markiewicz, C.B. Reese, J. Chem. Soc. Chem. Commun., 1977, 791; (d) S. Mielewczyk, Z. Gdaniec, G. Bobrowska, R.W. Adamiak, Nucleosides Nucleotides, 1987,6, 273; (e) R.W. Adamiak. E. Biała, B. Skalski, Angew. Chem. Int. Ed. Engl., 1985, 24, 1054; (f) B.L. Gaffney, R.A. Jones, Tetrahedron Lett., 1982, 23, 2253, 2257.
  • [37] X.-X. Zhou, J. Chattopadhyaya, Tetrahedron, 1986, 42, 5149.
  • [38] R.T. Pon, N. Usman, M.J. Damha, K.K. Ogilvie, Nucleic Acids Res., 1986, 14, 6453; (b) J.S. Eadie, W.J. Davidson, Nucleic Acids Res., 1987, 15, 8333.
  • [39] (a) J.A. Zoltewicz, D.F. Klark, T.W. Sharpless, G. Grahe, J. Am. Chem. Soc., 1970, 92, 1741; (b) J.W. Efkavitch. C. Heiner, Nucleosides Nucleotides, 1985, 4, 267.
  • [40] D.H. Ramier, H.G. Khorana, J. Am. Chem. Soc., 1962, 84, 3112.
  • [41] J. Kaufman, M. Le, G. Ross, R Hing, E.Yu. Budiansky, E. Campbell, V. Yoshimura, V. Fitzpatrick, K. Nadimi, A. Andrus, BioTechniques, 1993, 14, 834.
  • [42] (a) M.D. Brown, D.I. Magrath, A.H. Neilson, A. Todd, Nature, 1956,177,1124; (b) B.E. Griffin, M. Jarman, C.B. Reese, Tetrahedron, 1968, 24, 639.
  • [43] D.M. Brown, A.R. Todd, J. Chem. Soc., 1952, 44.
  • [44] C.B. Reese, Tetrahedron, 1978, 34, 3143.
  • [45] B.E. Griffin, C.B. Reese, Tetrahedron Lett., 1964, 2925.
  • [46] (a) J. Smrt, F. Sorm, Coll. Czech. Chem. Comm., 1962, 27, 63; (b) M Smith, D.H. Rammler, I.H. Goldberg, H.G. Khorana, J. Am. Chem. Soc., 1962, 84, 430.
  • [47] C.B. Reese, R. Saffliill, J.E. Sulston, J. Am. Chem. Soc., 1967, 89, 3366; Tetrahedron, 1970, 26, 1023.
  • [48] (a) C.B. Reese, H.T. Serafinowska, G. Zappia, Tetrahedron Lett., 1986,27,2291; (b) C.B. Reese, V. Rao, H.T. Serafinowska, E.A. Thompson, P.S. Yu, Nucleosides Nucleotides, 1991,10, 81; (c) M.V. Rao, C.B. Reese, V. Schehlmann, RS. Yu, J. Chem. Soc. Perkin Trans. I, 1993, 43; (d) W. Lloyd, C.B. Reese, Q. Song, A.M. Vandersteen, C. Visintin, P.-Z. Zhang, J. Chem. Soc. Perkin Trans. I, 2000, 165.
  • [49] (a) S. Yamakage, O. Sakatsume, E. Furuyama, H. Takaku, Tetrahedron Lett., 1989, 30, 6361; (b) . S. Yamakage, O. Sakatsume, H. Takaku, Nucleic Acids Res Symp. Ser. 21, 1989, 81; (c) O. Sakatsume, T. Yamaguchi, M. Ishikawa, I. Hirao, K.-I. Miura, H. Takaku, Tetrahedron, 1991, 41, 8717.
  • [50] (a) E. Ohtsuka, S. Tanaka, M. Ikehara, Nucleic Acids Res., 1974, 1, 1351; (b) T. Sakata, H. Hiroaki, Y. Oda, T. Tanaka, M. Ikehara, S. Uesugi, Nucleic Acids Res., 1990,18, 3831.
  • [51] S.Y. Wang, Photochemistry and Photobiology o f Nucleic Acids, vol. 1 & 2, Academic Press, New York 1976.
  • [52] O. Odai, H. Kodama, H. Hiroaki, T. Sakata, T. Tanaka, S. Uesugi, Nucleic Acids Res., 1990, 18, 5955.
  • [53] (a) B.E. Cooper, Chem. Ind., 1978, 794; (b) T.W. Greene, Protective Groups in Organic Synthesis, John Wiley & Sons, New York 1981.
  • [54] W.T. Markiewicz, J. Chem. Res. (S), 1979, 24.
  • [55] C.A.A. vanBoeckel, J.H. van Bcom. Tetrahedron, 1985. 41, 4567.
  • [56] K.K. Ogilvie, E.A. Thompson, M.A. Quillam, J.B. Westmore, Tetrahedron Lett., 1974, 2861.
  • [57] E.J Corey, A. Venkatesvarlu, J. Am. Chem. Soc., 1972, 94, 6190.
  • [58] K.K. Ogilvie, J. Carbohydrates, Nucleosides. Nucleotides, 1976, 3, 197.
  • [59] K.K. Ogilvie, S.L. Beaucage, A.L. Schifman, NY. Thierault, K.L. Sadana, Can. J. Chem., 1978, 56. 2768.
  • [60] G.H. Hakimelahi, Z.A. Proba, K.K. Ogilvie, Can. J. Chem.. 1982, 60. 1106.
  • [61] S.S Jones, C.B. Reese, J. Chem. Soc. Perkin Trans. I, 1979, 2762.
  • [62] J. Milecki. P. Dembek, W.Z. Antkowiak, Z. Gdaniec, S. Mielewczyk, R.W. Adamiak, Nucleosides, Nucleotides, 1989, 8, 463.
  • [63] (a) N. Usman, K.K. Ogilvie, M.-Y. Jiang, R.J. Cedergren, J. Am. Chem. Soc., 1987,109, 7845; (b) K.K. Ogilvie, N. Usman, K. Nicoghosian, R.J Cedergren, Proc. Natl. Acad. Sci. U.S.A., 1989. 85. 5464- (c) J.T. Goodwin. W.A. Stanick. G D. Glick, J. Org. Chem., 1994. 59, 7941; (d) D. Gasparutto, T. Livache, H. Bazin, A.-M. Duplaa, A.M. Guy, A. Khorlin, D. Molko, A. Roget, R. Téoule, Nucleic Acids Res., 1992. 20, 5159.
  • [64] R. Kierzek, dane niepublikowane.
  • [65] K.L. Sadana, P.C. Loevven, Tetrahedron Lett., 1978, 5095.
  • [66] X. Wu, S. Pitsch, Nucleic Acids Res., 1998, 26, 4315.
  • [67] A. Sandstrom, M. Kwiatkowski, J. Chattopadhyaya. Acta Chem. Scand. B, 1985b, 39, 273.
  • [68] S.A. Scaringe, F.E. Wincott, M.H. Caruthers, J. Am. Chem. Soc., 1998, 120, 11820.
  • [69] R. Micura, Chem. Eur. J., 1999, 5, 2077.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BUS1-0010-0060
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.