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Isotope effects on enzymatic and nonenzymatic reactions of phosphorothioates

Treść / Zawartość
Identyfikatory
Warianty tytułu
Konferencja
Proceedings of the International Conference “2001 an Isotope Odyssey: New Application for a New Millenium", June 24-29, 2001, Zakopane, Poland
Języki publikacji
EN
Abstrakty
EN
Kinetic isotope effects have been measured for the aqueous hydrolysis reactions of p-nitrophenyl phosphorothioate (pNPPT) and the diester ethyl p-nitrophenyl phosphorothioate, and for the alkaline phosphatase-catalyzed reaction with pNPPT. The results show that the transition states of the uncatalyzed reactions of the phosphorothioate mono- and diesters are very similar to those of the corresponding phosphate ester reactions. The secondary 18O nonbridge isotope effects in reactions of phosphate esters become more normal as the mechanism changes from dissociative, metaphosphate-like to associative, phosphorane-like. The opposite trend occurs in phosphorothioate esters, due to differences in the relative contributions of bond-order changes and bending modes to this isotope effect. The KIEs for the alkaline phosphatase-catalyzed reaction of pNPPT are most consistent with a tight, triester-like transition state, probably a result of perturbations resulting from the larger size of sulfur that lead to a nucleophile attack angle that is unfavorable for an in-line process with a loose transition state.
Czasopismo
Rocznik
Strony
17--23
Opis fizyczny
Bibliogr. 38 poz., rys.
Twórcy
autor
  • Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322-0300, USA Present address: Department of Chemistry, University of Rochester, Rochester, NY, 14627, USA
autor
  • P. G. Czyryca, A. C. Hengge" Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322-0300, USA, Tel.: 453-797-3442, Fax: 435-797-3390
autor
  • P. G. Czyryca, A. C. Hengge" Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322-0300, USA, Tel.: 453-797-3442, Fax: 435-797-3390
Bibliografia
  • 1. Almer H, Stromberg R (1996) Base catalysis and leaving group dependence in intramolecular alcoholysis of uridine 3’-(aryl phosphorothioate)s. J Am Chem Soc 118:7921–7928
  • 2. Ba-Saif SA, Waring MA, Williams A (1990) Single transition state in the transfer of a neutral phosphoryl group between phenoxide ion nucleophiles in aqueous solution. J Am Chem Soc 112:8115–8120
  • 3. Bigeleisen J, Wolfsberg M (1958) Theoretical and experimental aspects of isotope effects in chemical kinetics. Adv Chem Phys 1:15–76
  • 4. Breslow R, Katz I (1968) Relative reactivities of p-nitrophenyl phosphate and phosphorothioate toward alkaline phosphatase and in aqueous hydrolysis. J Am Chem Soc 90:7376–7377
  • 5. Brown DM, Usher DA (1965) Hydrolysis of hydroxyalkyl phosphate esters. Effect of changing ester group. J Am Chem Soc 87:6558–6564
  • 6. Buchwald SL, Friedman JM, Knowles JR (1984) Stereochemistry of nucleophilic displacement on two phosphoric monoesters and a phosphoguanidine: the role of metaphosphate. J Am Chem Soc 106:4911–4916
  • 7. Buchwald SL, Pliura DH, Knowles JR (1984) Stereochemical evidence for pseudorotation in the reaction of a phosphoric monoester. J Am Chem Soc 106:4916–4922
  • 8. Burgess J, Blundell N, Cullis PM, Hubbard CD, Misra R (1988) Evidence for free monomeric thiometaphosphate anion in aqueous solution. J Am Chem Soc 110:7900–7901
  • 9. Caldwell SR, Raushel FM, Weiss PM, Cleland WW (1991) Transition-state structures for enzymatic and alkaline phosphotriester hydrolysis. Biochemistry 30:7444–7450
  • 10. Chlebowski JF, Coleman JE (1974) Mechanisms of hydrolysis of O-phosphorothioates and inorganic thiophosphate by Escherichia coli alkaline phosphatase. J Biol Chem 249:7192–7202
  • 11. Coleman JE (1992) Structure and mechanism of alkaline phosphatase. Annu Rev Biophys Biomol Struct 21:441–483
  • 12. Cullis PM, Iagrossi A (1986) Thiophosphoryl-transfer reactions:stereochemical course of solvolysis of p-nitrophenyl thiophosphate. J Am bChem Soc 108:7870–7871
  • 13. Cullis PM, Misra R, Wilkins DJ (1987) Free monomeric thiometaphosphate in protic solvents: complete racemisation at phosphorus in the ethanolysis of 4-nitrophenyl thiophosphate. J Chem Soc Chem Comm 20:1594–1596
  • 14. Davis AM, Hall AD, Williams A (1988) Charge description of base-catalyzed alcoholysis of aryl phosphodiesters: a ribonuclease model. J Am Chem Soc 110:5105–5108
  • 15. Davis AM, Regan AC, Williams A (1988) Experimental chargé measurements at leaving oxygen in the bovine ribonuclease A catalyzed cyclization of uridine 3’-phosphate aryl esters. Biochemistry 27:9042–9047
  • 16. Domanico P, Mizrahi V, Benkovic SJ (1986) Observations on the chemistry of phosphorothioate transfer. In: Frey PA (ed) Mechanisms of enzymatic reactions: stereochemistry. Elsevier, New York, pp 127–137
  • 17. Friedman JM, Freeman S, Knowles JR (1988) The quest for free metaphosphate in solution: racemization at phosphorus in the transfer of the phospho group from aryl phosphate monoesters to tert-butyl alcohol in acetonitrile or in tert-butyl alcohol. J Am Chem Soc 110:1268–1275
  • 18. Guthrie RD, Jencks WP (1989) IUPAC recommendations for the representation of reaction mechanisms. Acc Chem Res 22:343–349
  • 19. Han R, Coleman JE (1995) Dependence of the phosphorylation of alkaline phosphatase by phosphate monoesters on the pKa of the leaving group. Biochemistry 34:4238–4345
  • 20. Hengge AC, Cleland WW (1990) Direct measurement of transition-state bond cleavage in hydrolysis of phosphate esters of p-nitrophenol. J Am Chem Soc 112:7421–7422
  • 21. Hengge AC, Cleland WW (1991) Phosphoryl-transfer reactions of phosphodiesters: characterization of transition states by heavyatom isotope effects. J Am Chem Soc 113:5835–5841
  • 22. Hengge AC, Edens WA, Elsing H (1994) Transition state structures for phosphoryl-transfer reactions of p-nitrophenyl phosphate. J Am Chem Soc 116:5045–5049
  • 23. Hengge AC, Tobin AE, Cleland WW (1995) Studies of transitionstate structures in phosphoryl transfer reactions of phosphate diesters of p-nitrophenol. J Am Chem Soc 117:5919–5926
  • 24. Hollfelder F, Herschlag D (1995) The nature of the transition state for enzyme-catalyzed phosphoryl transfer. Hydrolysis of O-aryl phosphorothioates by alkaline phosphatase. Biochemistry 34:12255–12264
  • 25. Holtz KM, Catrina IE, Hengge AC, Kantrowitz ER (2000) Mutation of Arg-166 of alkaline phosphatase alters the thio effect but not the transition state for phosphoryl transfer. Implications for the interpretation of thio effects in reactions of phosphatases. Biochemistry 39:9451–9458
  • 26. Hong SB, Raushel FM (1996) Metal-substrate interactions facilitate the catalytic activity of the bacterial phosphotriesterase. Biochemistry 35:10904–10912
  • 27. Iyengar R, Eckstein F, Frey PA (1984) Phosphorus-oxygen bond order in adenosine 5’-O-phosphorothioate dianion. J Am Chem Soc 106:8309–8310
  • 28. Kim EE, Wyckoff HW (1991) Reaction mechanism of alkaline phosphatase based on crystal structures. J Mol Biol 218:449–464
  • 29. Kirby AJ, Jencks WP (1965) The reactivity of nucleophilic reagents toward the p-nitrophenyl phosphate dianion. J Am Chem Soc 87:3209–3216
  • 30. Kirby AJ, Varvoglis AG (1967) The reactivity of phosphate esters. Monoester hydrolysis. J Am Chem Soc 89:415–423
  • 31. Knight WB, Weiss PM, Cleland WW (1986) Determination of equilibrium 18O isotope effects on the deprotonation of phosphate and phosphate esters and the anomeric effect on deprotonation of glucose 6-phosphate. J Am Chem Soc 108:2759–2761
  • 32. Liang C, Allen LC (1987) Sulfur does not form double bonds in phosphorothioate anions. J Am Chem Soc 109:6449–6453
  • 33. O’Leary MH, Marlier JF (1979) Heavy-atom isotope effects on the alkaline hydrolysis and hydrazinolysis of methyl benzoate. J Am Chem Soc 101:3300–3306
  • 34. Parkin DW (1991) Methods for the determination of competitive and noncompetitive kinetic isotope effects. In: Cook PF (ed) Enzyme mechanism from isotope effects. CRC Press, Boca Raton, FA, pp 269–290
  • 35. Reid TW, Wilson IB (1971) E. Coli alkaline phosphatase. In: Boyer PD (ed) The enzymes. Academic Press, New York, pp 373–415
  • 36. Smith MB, March J (2001) Methods of determining reaction mechanisms. Wiley, New York
  • 37. Sowa GA, Hengge AC, Cleland WW (1997) 18O isotope effects support a concerted mechanism for ribonuclease A. J Am Chem Soc 119:2319–2320
  • 38. Weiss PM, Knight WB, Cleland WW (1986) Secondary 18O isotope effects on the hydrolysis of glucose-6-phosphate. J Am Chem Soc 108: 2761–2762
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BUJ6-0006-0060
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