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Konfiguracja i konformacja w informatycznej technologii molekularnej
Języki publikacji
Abstrakty
Processes of sequential forcing of the nanostructure configuration, and also the self-replication and self-organization processes which may be performed in the nanoprocess arę the phenomena that may make successful the direct materials nano-fabrication in the systems of informatics, possible. Since the nanostructures are being created from the basie elements represented by molecules, the arising structure is adopting a certain spatial shape. The spatial forming of the nanostructures has an essential meaning from a point of view of the created types of desirable products and their properties both as a finał molecular technology result and as functioning nanostructures in signal transduction pathways inside the running nanoprocess. In the paper the problem of determining of the nanostructures conformation is discussed in case of free conformation forming as well as in case of constraints existence.
Czasopismo
Rocznik
Tom
Strony
15--28
Opis fizyczny
Bibliogr. 24 poz., rys.
Twórcy
autor
- Institute of Theoretical and Applied Informatics Polish Academy of Sciences 44-100 Gliwice, ul. Bałtycka 5
Bibliografia
- [1] Węgrzyn S., Nanosystems of Informatics, International Journal of Systems Sciences, Vol. 32, No 12,2001,pp. 1389-1397.
- [2] Węgrzyn S., Znamirowski L., Multi-stage Informatic Technology, Archiwum Informatyki Teoretycznej i Stosowanej, T. 17, Z. 3, 2005, pp. 173-188.
- [3] Znamirowski L., Molecular Synergy of Nanoprocesses, 2005 5th IEEE Conference on Nanotechnology, lEEE-NANO 2005, Proceedings of IEEE-NANO 2005, Nagoya, Japan, July 11 - 15, CD-ROM IEEE Catalog No.: 05TH8816C, ISBN: 0-7803-9200-0, IEEE 2005.
- [4] Heater S. H., Zukowska E. D., Znamirowski L., Information Processing in the Signal Casca-des of Nanonetworks, ICCE-W, Tenth International Conference on Composites/ Nano Engineering, Intern. Community for Composites Engineering, New Orleans, Louisiana, July 20-26,2003, pp. 233-234.
- [5] Węgrzyn S., Winiarczyk R., Znamirowski L., Nanotechnologies and Nanosystems of Informatics as a Basis for Self-replication, Proceedings of the Second IEEE Conference on Nanotechnology, IEEE-NANO 2002, Washington DC, August 26-28, 2002, IEEE 2002, pp. 99-102.
- [6] Węgrzyn S., Znamirowski L., Nanotechnological, Two-stage Production Processes, 2003 Third IEEE Conference on Nanotechnology, IEEE-NANO 2003, Proceedings-Volume Two, San Francisco, California, 12-14 August, 2003, IEEE 2003, pp. 490-493.
- [7] Małysiak B., Mrozek D., Kozielski S., Znamirowski L., Signal Transduction Simulation in Nanoprocesses using Distributed Database Environment, Proceedings of the Fifth IASTED International Conference on MODELLING, SIMULATION, AND OPTIMIZATION , Ed.: G. Tonella, Oranjestad, Aruba, August 29-31, 2005, ACTA Press, Anaheim-Calgary-Zurich 2005, pp. 17-22.
- [8] Węgrzyn S., Winiarczyk R., Znamirowski L., Self-replication Processes in Nanosystems of Informatics, Int. Journal of Applied Mathematics and Computer Science, Vol. 13, No. 4, 2003, pp. 585-591.
- [9] Nowak S., Węgrzyn S., Znamirowski L., Self-organization Process Inside the Set of Elements Inspired by their Properties, Archiwum Informatyki Teoretycznej i Stosowanej, T. 17, Z. 4, 2005, pp. 231-240.
- [10] Merrifield R. B., Solid phase synthesis, Science, Vol. 232, 1986, pp. 341-347.
- [11] Znamirowski L., Conformational Switching in the Nanoprocesses, Chapter IV in: S. Węgrzyn, B. Pochopień, T. Czachórski (Eds.): Problems of Contemporary Computer Networks, New Technologies, WNT, Warsaw 2004, pp. 53-62 (in Polish).
- [12] Hosokawa K., Fujii T., Nojima T., Shoji S. et al., Cell-free mRNA translation in a microbio-chemical reactor, IEEE Intern. Symp. on Micromechatronics and Hum. Sci., IEEE, 1997, pp. 91-95.
- [13] Węgrzyn S., Klamka J., Znamirowski L., Winiarczyk R., Nowak S., Nano and quantum systems of informatics, Bulletin of the Polish Academy of Sciences (Technical Sciences), Vol. 52, No. l,2004,pp. 1-10.
- [14] Nowak S., Nowak M., Self-organization in nanosystems of informatics, Archiwum Informatyki Teoretycznej i Stosowanej, T. 16, Z. 4, 2004, pp. 311-320.
- [15] Lodish H., Berk A., Zipursky S. L. et al., Molecular Cell Biology, Fourth Edition, W. H. Freeman and Company, New York 2001.
- [16] Znamirowski L., Zukowska E. D., Simulation of Post-translational Conformations in the Ri-bosomal Polypeptide Synthesis, Proc. of the IASTED Int. Conf. MODELLING AND SIMULATION, Marina del Rey, California, May 13-15, ACTA Press, Anaheim-Calgary-Zurich 2002, pp. 97-102.
- [17] Znamirowski L., Two-phase Algorithm for the Conformation of Nanostructures Determi-nation, Chapter 3 in: S. Węgrzyn, B. Pochopień, T. Czachórski (Eds.): High-efficient Computer Networks. New Technologies, WKŁ, Warsaw 2005, pp. 27-36 (in Polish).
- [18] Znamirowski L., SWITCHING. VLSI Structures, Reprogrammable FPAA Structures, Nanostructures, STUDIA INFORMATICA, Vol. 25, No. 4A (60), Gliwice 2004, pp. 1-236.
- [19] Znamirowski L., Zukowska E. D., Simulation of Environment-Forced Conformations in the Polypeptide Chains, Proceedings ofthe ICSEE'03, 2003 Western MultiConference, The So-ciety for Modeling and Simulation Intern., Orlando, Florida, January 19-23, 2003, pp. 87-91.
- [20] Warecki S., Znamirowski L., Random Simulation of the Nanostructures Conformations, Proceedings Volume I, International Conference on Computing, Communication and Control Technology, The International Institute of Informatics and Systemics, Austin, Texas, August 14-17,2004, pp. 388-393.
- [21] Znamirowski L., Non-gradient, Sequential Algorithm for Simulation of Nascent Polypeptide Folding, Computational Science - 1CCS 2005, 5th International Conference, Proceedings, Part I (Eds.: V.S. Sunderam et al.), Atlanta, Georgia, May 2005. LNCS 3514, Springer-Verlag, Berlin Heildelberg 2005, pp. 766-774.
- [22] Ponder J., TINKER - Software Tools for Molecular Design, Department of Biochemistry & Molecular Biophysics Washington University, School of Medicine, St. Louis, 2001, http://dasher.wusd. edu/tinker
- [23] Sayle R., RasMol, Molecular Graphics Visualization Tool, Biomolecular Structures Group, Glaxo Wellcome Research & Development, Stevenage, Hartfordshire, 1998, H. J. Bernstein v.2.7.1.1, rasmol @bernstein-plus-sons.com
- [24] Hovmoller S., Zhou T., Ohlson T., Conformations of amino acids in protein, Acta Crystalog., Vol. D58, No. 5, 2002, pp. 768-776.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BUJ6-0003-0054