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Signal transduction in nanoprocess cells

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  • Institute of Infformatics, Technical
Bibliografia
  • [1]Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. and Bourne, P.E.: The Protein Data Bank. Nucleic Acids Res., 28, 235-242, (2000).
  • [2] Greer, D.S., Westbrook, J.D. and Bourne, P.E.: An ontology driven architecture for derived representa-tions of macromolecular structure. Bioinformatics, 18, 1280-1281, (2002).
  • [3] Apweiler, R., Bairoch, A., Wu, C.H., et al.: Uni Prot: the Universal Protein knowledgebase, Nucleic Acids Research, 32: Dl 15-D119, (2004).
  • [4] Berridge, M.J., The Molecular Basis of Communication within the Cell, Scientific American, 253 (4), p. 142-152.
  • [5] Bourne, P.E., Berman, H.M., Watenpaugh, K., et al.: The macromolecular Crystallographic Information File (mmCIF). Methods Enzymol., 277, 571-590, (1997).
  • [6] Brown, N.R., Noble, M.E.M., Alison, A.M., et al., Effects of Phosphorylation of Threonine 160 on Cyclindependent Kinase 2 Structure and Activity, The Journal of Biol. Chem, 274(13), p. 8746-8756, (1999).
  • [7] Hogue, C, Ohkawa, H. and Bryant, S.: A dynamic look at structures: WWW-Entrez and the Molecular Modelling Database. Trends Biochem. Sci. 21: 226-229, (1996).
  • [8] Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J., Wheeler, D.L.: GenBank: update. Nucleic Acids Res., 32 (Database issue):D23-6, (2004).
  • [9] BioCarta: Charting Pathways of Life, http://www.biocarta.com/genes/
  • [10] Sayle, R., RasMol, Molecular Graphics Visualization Tool, Biomolecular Structures Group, Glaxo Wel-come Research & Development, Stevenage, Hartfordshire 1998, H. J. Bernstein v.2.7.1.1, ras-mol@bemstein-plus-sons.com
  • [11]Boeckmann, B., Bairoch, A., Apweiler, R., Blatter, M.C., Estreicher, A., Gasteiger, E., Martin. M..T. Michoud,K.,0,Donovan,C.,Phan,I.etal.:The SWTSS –PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res., 31, p. 365-370, (2003).
  • [12] Bader, G.D., Betel, D., Hogue, C.W.V.: BIND: the Biomolecular Interaction Network Data-base. Nucleic Acids Research, Vol. 31, No. 1 p. 248-250, (2003).
  • [13] Snyder, S.H., The Molecular Basis of Communication between Cells, Scientific American, 253 (4), p. 132-141,(1985).
  • [14] “Signal Transduction Simulation System Using the Distributed Databases Environment", Research Project BW/2004/05, Institute of informatics, Silesian University of Technology, Gliwice, (2005).
  • [15] http://www.omg.org
  • [16] http://www.ncbi.nlm.nih.gov
  • [17] Callaway, J., Cummings, M., et al., Protein Data Bank Contents: Atomic Coordinate Entry Format De-scription, Federal Govern. Agency, (1996), http://www.rcsb.org/pdb/docs/formaty
  • [18] http://openmms.sdsc.edu
  • [19] Tonegawa, S., The Molecules of the Immune System, Scientific American, 253 (4), p. 122-131 (1985).
  • [20] Wang, Y., Addess, K.J., Geer, L., Madej, T., Marchler-Bauer, A., Zimmerman, D., Bryant S.H.: MMDB: 3D structure data in Entrez, Nucleic Acids Res. 28, p. 243-245, (2000)
  • [21] Ray, L.B,The Science of Signal Transduction, Science, 284, p. 755-756, (1999).
  • [22] Małysiak, B.: Approximate retrieval methods in database systems. Ph.D. thesis, Gliwice, (2003).
  • [23] Baxevanis, A.D., Ouellette, B.F.F.: Bioinformatics. A Practical Guide to the Analysis of Genes and Pro-teins. John Wiley & Sons, Inc. (2001).
  • [24] Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J.: Basic local alignment search tool. J Mol Biol, 215:403-10, (1990).
  • [25] Gibrat, J.F., Madej, T., Bryant, S.H.: Surprising similarities in structure comparison Curr Opin Struct Biol, 6(3):377-385, Jun. (1996).
  • [26] Znamirowski, L., SWITCHING. VLSI Structures, Reprogrammable FPAA Structures, Nanostructures,Studia Informatica, Vol. 25, No. 4A (60), p. 1-236, (2004).
  • [27] Hames, B.D., Hooper, N.M., Houghton, J.D.: Instant Notes in Biochemistry. BIOS Scientific Publishers Limited, (1997).
  • [28] Małysiak, B.: Approximate queries in databases, Studia Informatica, Vol. 23, No. 4 (51), p. 139-152, Gliwice, (2002).
  • [29] Węgrzyn S.: Nanosystems of informatics. International Journal of Systems Science 32, p. 1389-1397, (2001).
  • [30] Warecki S., Znamirowski L.: Random Simulation of the Nanostructures Conformations, Intern. Conference on Computing, Communication and Control Technology, Proceedings Volume I, The Intern. Institute of Informatics and Systemics, Austin, Texas, August 14-17, p. 388-393, (2004).
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Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BUJ3-0002-0043
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