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Integration of DNA and bionical engineering

Wybrane pełne teksty z tego czasopisma
Identyfikatory
Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
A unified geometric version of a mechanical model of a single stretched and compressed double-stranded DNA is suggested. This version is comfortable for use by scaling for development of bionical engineering models of a wide class of highly innovative devices.
Rocznik
Strony
359--369
Opis fizyczny
Bibliogr. 30 poz.
Twórcy
autor
autor
  • National Technical University of Ukraine "Kiev Polytechnic Institute" Kiev-03056, UKRAINE, vvgonch@ukr.net
Bibliografia
  • Ashby W.R. (1960): Design for a Brain. The origin of adaptive behavior. - 2-d ed. Rev. London, Chapmen and Hall.
  • Askadskii A.A. and Matveev Ju.I. (1983): Chemical structure and physics of polymers. - Moscow "Chemistry"(Russian).
  • Barkley M.D. and Zimm B.H. (1979): Theory of twisting and bending of chain macromolecule; analysis of the fluorescence depolarization of DNA. - J. Chem. Phys., vol.70, No.6, pp.2991-3007.
  • Baumann C.G., Smith S., Bloomfield V.A. and Bustamante C. (1997): Ionic effects on the elasticity of single DNA molecules. - Proc. Natl. Acad. Sci. USA, vol.94, pp.6185-6190.
  • Bryant Z., Stone M.D., Gore J., Smith S.B., Cozzareli N.R. and Bustamante C. (2003): Structural transition and Elasticity from torque measurement on DNA. - Nature, vol.494, No.17, pp.338-341.
  • Bustamante C., Bryant Z. and Smith S.B. (2003): Ten years of tension: single molecule DNA mechanics. - Nature, vol.421, pp.423-427.
  • Bustamante C., Smith S.B., Liphardt J. and Smith D. (2000): Single molecule studies of DNA mechanics. - Current Opinion in Structural Biology, vol.10, pp.279-285.
  • Du Q., Kotlyar A. and Vologodskii A. (2008): Kinking the double helix by bending deformation. - Nucleic Acids Research, vol.36, No.4, pp.1120-1128.
  • Gore J., Bryant Z., Nollman M., Le M.U., Cozzarely N.R. and Bustamante C. (2006): DNA overwind when stretched. - Nature, vol.442, No.17, pp.836-839.
  • Kabanov A.V., Komarov V.M., Yakushevich L.V. and Teplukhin A.V. (2004): Low-frequency intra- and intermolecular vibration modes of H-bonded nucleobases in oligonucleotide double helices and hydrates nucleotide duplex: Application of the DM3 method. - Intern. J. Quantum Chem., vol.100, No.4, pp.595-609.
  • Kamlyuk A.N., Shirko A.V. and Nemtsov V.B. (2007): Geometric features of the DNA double helix in the supercoiled state. - Molecular Biophysics. vol.52, No.1, pp.19-23.
  • Kosikov K.M., Gorin A.A., Zhurkin V.B. and Olson V.K. (1999): DNA stretching and compression: Large-scale simulations of double helix structures. - J. Mol. Biol., vol.289, pp.1301-1326.
  • Lee T.D.M., Parker G.J., Zoorob M.E., Cox S.J. and Charlton M.D.B. (2006): Design and simulation of highly symmetric photonic quasi-crystals. - Nanotechnology; vol.16, pp.2703-2706.
  • Limanskaya L. and Limanskii A. (2006): Compaction of single supercoiled DNA molecules absorbed onto amino mica. - Russian Journal Bioorganic Chemistry, vol.32, No.5, pp.494-510.
  • Limanskaya L. and Limanskii A. (2006): S-DNA is oversupercoiled with DNA 1.94-1.19A rise per nucleotide. - Molecular Biology. vol.40, No.1, pp.107-120.
  • Limanskaya O.Yu. and Limanskii A.P. (2008): Imaging compaction of single supercoiled DNA molecules by atomic force microscopy. - Gen. Physiol. Biophysics., vol.27, pp.322-337.
  • Lionett T., Jouband S., Lavery R., Bensimon D. and Croquette V. (2006): Wrinding Out DNA. - Physical Review Letters, vol.96, pp.178102.
  • Lu X.-J. and Olson W.K. (2003): 3DNA: A software package for the analysis, rebuilding and visualization of three-dimentional nucleic acid structure. - Nucleic Acids Research, vol.31, No.17, pp.5108-5121.
  • Malkin A. Ya. and Isaev A.I. (2006): Rheology. Conceptions. Methods. Applications. - Toronto, Chem. Tech. Publ.
  • Rybenkov V.V., Vologodskii A.V. and Cozzareli N.K. (1997): The effect of ionic conditions of DNA helical repeat, effective diameter and free energy of supercoiling. - Nucleic Acids Research, vol.25, No.7, pp.1412-1418.
  • Saenger W. (1987): Principles of Nucleic Acid Structures. - New York: Springer - Verlag.
  • Savransky S.D. (2000): Engineering of creativity introduction to TRIZ Methodology of inventive problem solving. - New York: CRC. Press.
  • Sverdlov E.D. (2003): Great discovery: revolution, canonization, dogma and nonsense. - Bulletin of Russian Academy of Science, vol.73, No.6, pp.496-513 (Russian).
  • Ulanovsky L.E. and Trifonov E.N. (1983): Superhelicity of nucleosomal DNA changes its double-helical repeat. - Cell biophysics, vol.5, pp.263-283.
  • Van Krevelen A.V. (1990): Properties of polymers. 3rd Eddition. - Amsterdam, Oxford, New York, Elsevier Science Publishers.
  • Vologodskii A.V. (1988): Topology and physics of circular DNA. - Moscow ,"Nauka". (In Russian).
  • Vologodskii A.V. (1992): Topology and physics of circular DNA. -CRC Press. Boca Roton. FL.
  • Watson J.D. and Crick F.H.C. (1953): Molecular structure of nucleic acids: a structure for deoxyribose nucleic asid. - Nature, vol.171, pp.737-738.
  • Williams M., Werner J.R., Rousina I. and Bloomfield V.A. (2001): Effect of pH on the overstretching transition of double-stranded DNA: Evidence of Force-Induced DNA Melting. - Biophysical Journal, vol.80, pp.874-881.
  • Zhurkin V.B., Lysov Yu.P., Florentiev V.I. and Ivanov V.I. (1982): Torsional flexibility of B-DNA is revealed by conformational analysis. - Nucleic Acids Research, vol.10, No.5, pp.1811-1830.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BPZ5-0017-0003
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