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Metabolomics - new trends in life chemistry

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Identyfikatory
Warianty tytułu
Języki publikacji
EN
Abstrakty
Rocznik
Tom
Strony
85--99
Opis fizyczny
Bibliogr. 51 poz., rys.
Twórcy
autor
autor
autor
  • Environmental Chemistry & Bioanalytics, Faculty of Chemistry, Nicolaus Copernicus University, Gagarina 7, 87-100 Toruń, Poland, bbusz@chem.uni.torun.pl
Bibliografia
  • [1] Villas-Bôas S.G., Roessner U., Hansen M., Smedsgaard J., Nielsen J., 2007. Metabolome Analysis: An Introduction, J. Am. Soc. Mass Spectrom. 18, 1-2.
  • [2] Butcher E.C., Berg E.L., Kunkel E.J., 2004. Systems biology in drug discovery, Nat. Biotechnol. 22, 1253-1259.
  • [3] Goodacre R., Vaidyanathan S., Dunn W.B., Harrigan G., Kell D., 2004. Metabolomics by numbers: acquiring and understanding global metabolite data, Trends Biotechnol. 22, 245-252.
  • [4] Goodacre R., 2005. Metabolomics-the way forward, Metabolomics 1, 1-2.
  • [5] Edwards D., Batley J., 2004. Plant bioinformatics: from genome to phenome, Trends Biotechnol. 22, 232-237.
  • [6] Jonsson P., Johansson A., Gullberg J., Trygg J., Bjørn Grung J., Marklund S., Antti H., Moritz T., 2005. High-Throughput Data Analysis for Detecting and Identifying Differences between Samples in GC/MS-Based Metabolomic Analyses, Anal. Chem. 77, 5635-5642.
  • [7] Maloney V., 2004. Plant Metabolomics, BioTeach J. 2, 92-99.
  • [8] Sumner L., Mendes P., Dixon R., 2003. Plant metabolomics: large-scale phytochemistry in the functional genomics era, Phytochemistry 62, 817-836.
  • [9] Devaux P.G., Homing M.G., Homing B.C., 1971. Benyzl-oxime derivatives of steroids; a new metabolic profile procedure for human urinary steroids, Anal. Lett. 4, 70-82.
  • [10] Horning E.C., Homing M.G., 1971. Human metabolic profiles obtained by GC and GC/MS, J. Chromatogr. Sci. 9, 129-140.
  • [11] Cunnick W.R., Cromie J.B., Cortell R., Wright B., Beach E., Seltzer F., Miller S., 1972. Value of biochemical profiling in a periodic health examination program: analysis of 1,000 cases, Bulletin of New York Academy of Medicine 18, 5-22.
  • [12] Mroczek W.J., 1972. Biochemical profiling and the natural history of hypertensive diseases, Circulation 45, 1332-1333.
  • [13] Bales J.R., Bell J.D., Nicholson J.K., Sadler P.J., Timbrell J.A., Hughes R.D., Bennett P.N., Williams R., 1988. Metabolic profiling of body fluids by proton NMR: self- poisoning episodes with paracetamol (acetaminophen), Magnetic Resonance in Medicine 6, 300-306.
  • [14] Sauter H., Lauer M., Fitsch H., 1991. Metabolic profiling of plants a new diagnostic technique, [In:] American Chemical Society Symposium Series. D.R. Baker, J.G. Fenyes, W.K. Moberg (Eds.).
  • [15] Oliver S.G., Winson M.K., Kell D.B., Baganz F., 1998. Systematic functional analysis of the yeast genome, Trends Biotechnol. 16, 373-378.
  • [16] Fiehn O., 2001. Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks, Comp. Funct. Genomics 2, 155-168.
  • [17] Nielsen J., Oliver S., 2005. The next wave in metabolome analysis, Trends Biotechnol. 23, 544-546.
  • [18] Arabidopsis Genome Initiative, Analysis of the genome sequence of the flowering plant Arabidopsis thaliana, 2000. Nature 40, 796-815.
  • [19] Weber S.G., 2008. Editorial Metabolomics, Trends Anal. Chem. 27, 193.
  • [20] Bamba T., Fukusaki E., 2006. Technical problems and practical operations in plant metabolomics, J. Pestic. Sci. 31(3), 300-304.
  • [21] Dunn W.B., Ellis D.I., 2005. Metabolomics: Current analytical platforms and methodologies, Trends Anal. Chem. 24, 285-294.
  • [22] Moco S., Bino R.J., de Vos R.C.H., Vervoort J., 2007. Metabolomics technologies and metabolite identification, Trends Anal. Chem. 26, 855-866.
  • [23] Blingly R., Douce R., 2001. NMR and plant metabolism, Curr. Opin. Plant Biol. 4, 191-196.
  • [24] Chen L., Carpita N.C., Reiter W.D., Wilson R.H., Jeffries C., McCann M.C., 1998. A rapid method to screen for cell-wall mutantsusing discriminant analysis of Fourier transform infrared spectra, Plant J. 16, 385-392.
  • [25] Fiehn O., Kopka J., Trethewey R.N., Willmitzer L., 2000. Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spektrometry, Anal. Chem. 72, 3573-3580.
  • [26] Stitt M., Fernie A.R., 2003. From measurements of metabolites to metabolomics: an on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions, Curr. Opin. Biotechnol. 14, 136-144.
  • [27] van der Greef J., Stroobant P., van der Heijden R., 2004. The role of analytical sciences in medical systems biology, Curr. Opin.Chem. Biol. 8, 559-565.
  • [28] Georgakopoulos C.G., Kiburis J.C., 1996. Quantitative structure-retention relationships in doping control, J. Chrom. B 687, 151-156.
  • [29] Kaliszan R., 2007. Quantitative Structure-(Chromatographic). Retention relationships, Chem. Rev. 107, 3212-3246.
  • [30] Michel M., Bączek T., Studzińska S., Bodzioch K., Jonsson T., Kaliszan R., Buszewski B., 2007. Comparative evaluation of high-performance liquid chromatography stationary phases used for the separation of peptides in terms of quantitative structure–retention relationships, J. Chrom. A 1175, 49-54.
  • [31] Kaliszan R., Bączek T., Cimochowska A., Juszczyk P., Wiśniewska K., Grzonka Z., 2005. Prediction of high-performance liquid chromatography retention of peptides with the use of quantitative structure-retention relationships, Proteomics 5, 409-415.
  • [32] Noga S., Michel M., Buszewski B., 2009. Czy QSRR jest potrzebne chemii analitycznej, Analityka 3, 22-25.
  • [33] Johnson H.E., Broadhurst D., Goodacre R., Smith A.R., 2003. Metabolomic fingerprinting of salt-stressed tomatoes, Phytochemistry 62, 919-928.
  • [34] Camacho D., de la Fuente A., Mendes P., 2005. The origin of correlations in metabolomics data, Metabolomics 1, 53-63.
  • [35] Yu Lin Ch., Viant M.R., Tjeerdema R., 2006. Metabolomics: Methodologies and applications in the environmental sciences, J. Pestic. Sci. 31, 245-251.
  • [36] Bijlsma S., Bobeldijk I., Verheij E.R., Ramaker R., Kochhar S., Macdonald I.A., van Ommen B., Smilde A.K., 2006. Large-scale human metabolomics studies: a strategy for data (pre-) processing and validation, Anal. Chem. 78, 567-574.
  • [37] Gibney M.J., Walsh M., Brennan L., Roche H.M., German B., van Ommen B., 2005. Metabolomics in human nutrition: opportunities and challenges, Am. J. Clin. Nutr. 82, 497-503.
  • [38] Fiehn O., Kopka J., Dormann P., Altmann T., Trethewey R.N., Willmitzer L., 2000. Metabolite profiling for plant functional genomics, Nat. Biotechnol. 18, 1157-1161.
  • [39] Fiehn O., Weckwerth W., 2003. Deciphering metabolic networks, Eur. J. Biochem. 270, 579-588.
  • [40] Roberts J.K., 2000. NMR adventures in the metabolic labyrinth within plants, Trends Plant Sci. 5, 30-34.
  • [41] Roberts J.K., Jardetzky O., 1981. Monitoring of cellular metabolism by NMR, Biochim. Biophys. Acta 639, 53-76.
  • [42] Roberts J.K., Xia J.H., 1995. High-resolution NMR methods for study of higher plants, Methods Cell Biol. 49, 245-258.
  • [43] Weckwerth W., Wenzel K., Fiehn O., 2004. Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their coregulation in biochemical networks, Proteomics 4, 78-83.
  • [44] Holmes E., Foxall P.J., Spraul M., Farrant R.D., Nicholson J.K., Lindon J.C., 1997. 750 MHz 1H NMR spectroscopy characterisation of the complex metabolic pattern of urine from patients with inborn errors of metabolism: 2-hydroxyglutaric aciduria and maple syrup urine disease, J. Pharm. Biomed. Anal. 15, 1647-1659.
  • [45] Constantinou M.A., Papakonstantinou E., Benaki D., Spraul M., Shulpis K., Koupparis M.A., Mikros E., 2004. Application of nuclear magnetic resonance spectroscopy combined with principal component analysis in detecting inborn errors of metabolism using blood spots: a metabonomic approach, Anal. Chim. Acta 511, 303-312.
  • [46] Brindle J.T., Antti H., Holmes E., Tranter G., Nicholson J.K., Bethell H.W., Clarke S., Schofield P.M., McKilligin E., Mosedale D.E., 2002. Rapid and noninvasive diagnosis of the presence and severity of coronary heart disease using 1H-NMR-based metabonomics, Nat. Med. 8, 1439-1444.
  • [47] Brindle J.T., Nicholson J.K., Schofield P.M., Grainger D.J., Holmes E., 2003. Application of chemometrics to proton-NMR spectroscopic data to investigate a relationship between human serum metabolic profiles and hypertension, Analyst 128, 32-36.
  • [48] Teague C., Holmes E., Maibaum E., Nicholson J., Tang H., Chan Q., Elliott P., Wilson I.D., 2004. Ethyl glucoside in human urine following dietary exposure: detection by 1H NMR spectroscopy as a result of metabonomic screening of humans, Analyst 129, 259-264.
  • [49] Wang Y., Holmes E., Nicholson J.K., Cloarec O., Chollet J., Tanner M., Singer B.H., 2004. Utzinger Metabonomic investigations in mice infected with Schistosoma mansoni: an approach for biomarker identification, J., Proc. Natl. Acad. Sci. USA 101, 12676-12781.
  • [50] Bruder E.D., Lee P.C., Raff H., 2004. Metabolomic analysis of adrenal lipids during hypoxia in the neonatal rat: implications in steroidogenesis, Am. J. Physiol. Endocrinol. Metab. 286, 697-703.
  • [51] Kell D.B., 2004. Metabolomics and systems biology: making sense of the soup, Curr. Opin. Microbiol. 7, 296-307.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BATA-0011-0038
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