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Abstrakty
Automatic alignment (matching) of two-dimensional gel electro-phoresis images is of primary interest in the field of proteomics. The method of 2D gel image matching proposed in a previous paper [1] is based on fuzzy alignment of features extracted from gels' images and enables both global and local interpolation of the image grid, followed by brightness interpolation. There are two types of pixel coordinate mapping (forward and inverse) and the choice of mapping method might affect the quality of the results obtained. In this paper the two types of grid mapping method are compared.
Słowa kluczowe
Czasopismo
Rocznik
Tom
Strony
7--21
Opis fizyczny
Bibliogr. 31 poz., rys.
Twórcy
autor
- Institute of Chemistry, Silesian University, 9 Szkolna Street, 40-006 Katowice, Poland
autor
- Institute of Chemistry, Silesian University, 9 Szkolna Street, 40-006 Katowice, Poland
autor
- Unilever Research and Development Vlaardingen, Olivier van Noortlaan 120, 3133 AT, Vlaardingen, The Netherlands
autor
- Unilever Research and Development Vlaardingen, Olivier van Noortlaan 120, 3133 AT, Vlaardingen, The Netherlands
Bibliografia
- [1] K. Kaczmarek, B. Walczak, S. de Jong, and B.G.M. Vandeginste, J. Chem. Inf. Comput. Sci., 42, 1431 (2002)
- [2] P.H. O’Farrell, J. Biol. Chem., 250, 4007 (1975)
- [3] R. Westermeier, Electrophoresis in Practice: A Guide to Theory and Practice, VCH, Weinheim, 1993
- [4] J.E. Celis and P. Gromov, Curr. Opin. Biotechnol., 10, 16 (1999)
- [5] J.L. Harry, M.R. Wilkins, B.R. Herbert, N.H. Packer, A.A. Gooley, and K.L. Williams, Electrophoresis, 21, 1071 (2000)
- [6] D.S. Young and R.P. Tracy, J. Chromatogr. A, 698, 163 (1995)
- [7] L.R. Bandara and S. Kennedy, Drug Discovery Today, 7, 411 (2002)
- [8] P.F. Lemkin, C. Merril, L. Lipkin, M. Van Keuren, W. Oertel, B. Shapiro, M. Wade, M. Schultz, and E. Smith, Comput. Biomed. Res., 12, 517–544 (1979)
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- [11] P.F. Lemkin, Electrophoresis, 18, 461 (1997)
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- [13] K.P. Pleißner, F. Hoffmann, K. Kriegel, C. Wenk, S. Wegner, A. Sahlström, H. Oswald, H. Alt, and E. Fleck, Electrophoresis, 20, 755 (1999)
- [14] S. Veeser, M.J. Dunn, and G.Z. Yang, Proteomics, 1, 856 (2001)
- [15] Z. Smilansky, Electrophoresis, 22, 1616 (2001)
- [16] F. Hoffmann, K. Kriegel, and C. Wenk, Discrete Appl. Math., 93, 75 (1999)
- [17] K. Takahashi, M. Nakazawa, Y. Watanabe, and A. Konagaya, Genome Informatics, 9, 173 (1998)
- [18] J. Pánek and J. Vohradský, Electrophoresis, 20, 3484 (1999)
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- [20] K. Kaczmarek, B. Walczak, S. de Jong, and B.G.M. Vandeginste, J. Chem. Inf. Comput. Sci., in press
- [21] G. Wolberg, H.M. Sueyllam, M.A. Ismail, and K.M. Ahmed, J. Graphics Tools, 5, 11 (2000)
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- [23] M. Bern and D. Eppstein, Mesh Generation and Optimal Triangulation, Computing in Euclidean Geometry. In: Ding-Zhu Du and Frank Hwang (Eds), Lecture Notes Series on Computing, Vol. 1, World Scientific, Singapore, 1992
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- [25] M. Sonka, V. Hlavac, and R. Boyle, Image Processing, Analysis, and Machine Vision, Brooks and Cole Publishing, 1999
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Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BAT3-0026-0042