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Application of nine species-specific microsatellite loci to characterize three pike-perch (Sander lucioperca) populations from the Aral Sea basin in Uzbekistan

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Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
The pike-perch is one of the main commercial fish species in Uzbekistan. Historically, it inhabited the Aral Sea and deltas of inflowing rivers (Amu-Darya and Syr-Darya). At the beginning of the 1960s it was introduced into water bodies of the middle Amu-Darya and Syr-Darya from the Ural River. The present study was aimed to evaluate the current genetic status of wild pike-perch populations from different water bodies using nine recently isolated species-specific microsatellite markers. The three examined Uzbek pike-perch populations expressed significantly higher average numbers of alleles per locus (5.56 to 14.22) than three year-classes of a German wild population (3.11 to 3.78) included for comparison. On the other hand, average observed and expected heterozygosities were not significantly different in both regions (0.743 and 0.760 in Uzbek pike-perch; 0.576 and 0.471 in German pike-perch). After sequential Bonferroni corrections all Uzbek populations were found to be in Hardy-Weinberg equilibrium. Genetic differentiation between all populations as estimated by FST values was statistically significant. Pike-perch from Amu-Darya River delta and Tudakul reservoir were less differentiated from each other probably due to gene flow between them (both water bodies are connected) whereas the more distinct Syr-Darya River population showed indication for introgression with non-native individuals stocked in that region. Since stocking is widely practiced to satisfy the growing demand of pike-perch fisheries in Uzbekistan, fish seed for such activities should be obtained from local, genetically undisturbed populations such as the Amu-Darya River delta population.
Rocznik
Strony
3--10
Opis fizyczny
Bibliogr. 22 poz., rys., tab.
Twórcy
autor
autor
  • Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Müggelseedamm 310, 12587 Berlin, Germany, Phone: +49-30-64 181 634; Fax: +49-30-64 181 799, kohlmann@igb-berlin.de
Bibliografia
  • Amanov, A.A., N.M. Khalmatov, L.K. Sibirtseva. 1990. Akklimatizirovannye ryby vodoemov Uzbekistana (Introduced Fishes in Water Bodies of Uzbekistan). 116 p. Fan, Tashkent (in Russian).
  • Björklund, M., T. Aho, L.C. Larsson. 2007. Genetic differentiation in pikeperch (Sander lucioperca): the relative importance of gene flow, drift and common history. Journal of Fish Biology 71 (Supplement B): 264-278.
  • Borer, S.O., L.M. Miller, A.R. Kapuscinski. 1999. Microsatellites in walleye Stizostedion vitreum. Molecular Ecology 8: 336-338.
  • Cornuet, J.M., S. Piry, G. Luikart, A. Estoup, M. Solignac. 1999. New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics 153: 1989-2000.
  • DeWoody, J.A., J.C. Avise. 2000. Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. Journal of Fish Biology 56: 461-473.
  • Dieringer, D., C. Schlötterer. 2003. MICROSATELLITE ANALYSER (MSA): a platform independent analysis tool for large microsatellite data sets. Molecular Ecology Notes 3: 167-169.
  • Excoffier, L., P.E. Smouse, J.M. Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
  • Excoffier, L., G. Laval, S. Schneider. 2005. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.
  • Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle. Available at http://evolution.genetics.washington.edu/phylip.html
  • Goudet, J. 2002. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3.2). Available at http://www.unil.ch/izea/softwares/fstat.html
  • Isaev, A.I., E.I. Karpova. 1989. Rybnoe khoziaystvo vodokhranilishch (Fishery in Reservoirs). 254 p. Agropromizdat, Moskva (in Russian).
  • Kohlmann, K., P. Kersten. 2008. Isolation and characterization of nine microsatellite loci from the pike-perch, Sander lucioperca (Linnaeus, 1758). Molecular Ecology Resources 8: 1085-1087.
  • Kumar, S., K. Tamura, M. Nei. 2004. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Briefings in Bioinformatics 5: 150-163.
  • Leclerc,D., T.Wirth, L. Bernatchez. 2000. Isolation and characterization of microsatellite loci in the yellow perch (Perca flavescens), and cross-species amplification within the family Percidae. Molecular Ecology 9: 995-997.
  • Nei, M. 1987. Molecular Evolutionary Genetics. 512 p. Columbia University Press, New York.
  • Nei,M., F. Tajima, Y. Tateno. 1983. Accuracy of estimated phylogenetic trees from molecular data. Journal of Molecular Evolution 19: 153-170.
  • Poulet,N., P. Balaresque, T.Aho,M. Björklund. 2009.Genetic structure and dynamics of a small introduced population: the pikeperch, Sander lucioperca, in the Rhône delta. Genetica 135: 77-86.
  • Raymond, M., F. Rousset. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86: 248-249.
  • Rice, W.R. 1989. Analyzing tables of statistical tests. Evolution 43: 223-225.
  • Takezaki, N., M. Nei. 1996. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144: 389-399.
  • van Oosterhout, C., W.F. Hutchinson, D.P.M. Wills, P. Shipley. 2004. MICROCHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4: 535-538.
  • Wirth, T., R. Saint-Laurent, L. Bernatchez. 1999. Isolation and characterization of microsatellite loci in the walleye (Stizostedion vitreum), and cross-species amplification within the family Percidae. Molecular Ecology 8: 1960-1962.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BAR0-0062-0074
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