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Detection of recombinant mitochondrial genomes: Implications for the mechanism of mtDNA inheritance in mussel Mytilus

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Języki publikacji
EN
Abstrakty
EN
Recombination plays a fundamental role in the creation of biodiversity. It is the mechanism inducing formation of rearrangements within the genomes which, beside mutations, are the major source of genetic variation. In the process of recombination a single or double DNA strand is broken and rejoined with unassociated DNA fragments. There are several types of recombination: homologous recombination, sitespecific recombination and transposition. Within mitochondrial genomes, inter- and intra-molecular recombination can occur. Except for intramolecular recombination of mtDNA, the other types of recombination always result in the creation of mosaic genomes. However, in the natural populations mtDNA recombination is detected extremely rarely. It is caused by the clonal inheritance of mitochondrial genomes and consequential lack of sufficient divergence between parental mitochondrial molecules. Mussels of the genus Mytilus possess two types of mitochondrial genomes inherited from males and females, respectively, and their mode of mtDNA inheritance is called doubly uniparental inheritance (DUI). The presence of two highly diverged parental molecules gives the opportunity for detection of recombinant variants. This feature of Mytilus mtDNA can be broadly exploited in the search for and characteristics of recombinant sequences. Apart from the high level of sequence divergence, fusion of mitochondria and appropriate enzymatic toolkit are principal requirements for the occurrence of recombination. The majority of phylogenetic and demographic analysis based on mtDNA assumes the lack of recombination. If this assumption turned out to be erroneous, previous analyses would be weakened. Recombination is associated with DUI abnormalities, e.g. masculinization of mitochondrial genomes. It may even lead to the breakdown of DUI system resulting in the new, unidentified mode of mtDNA inheritance in mussel Mytilus that might be regulated by stochastic events.
Rocznik
Strony
54--59
Opis fizyczny
Bibliogr. 65 poz.
Twórcy
autor
  • Laboratory of Genetics of Marine Organisms, Institute of Oceanology, Polish Academy of Science, Powstańców Warszawy 55, 81-712 Sopot, Poland, filmo1@o2.pl
Bibliografia
  • Abbott, C.L.,M.C.Double, J.W.H. Trueman,A.Robinson,A. Cockburn. 2005. An unusual source of apparent mitochondrial heteroplasmy: duplicate mitochondrial control regions in Thalassarche albatrosses. Molecular Ecology 14: 3605-3613.
  • Avise, J.C., J. Arnold, R.M. Ball, E. Bermingham, T. Lamb, J.E. Neigel, C.A. Reeb, N.C. Saunders. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between genetics and systematics. Annual Review of Ecology and Systematics 18: 489-522.
  • Boore, J.L. 1999. Animal mitochondrial genomes. Nucleic Acids Research 27: 1767-1780.
  • Boore, J.L. 2000. The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals. In: Comparative Genomics (ed. D. Sankoff, J. Nadeau), pp. 133-147. Computational Biology Series vol 1, Kluwer Academic Publishers, Dordrecht, Netherlands.
  • Breton, S., G. Burger, D.T. Stewart, P.U. Blier. 2005. Comparative analysis of gender associated complete mitochondrial genomes in marine mussel (Mytilus spp). Genetics 172: 1107-1119.
  • Burzyński, A., M. Zbawicka, D.O.F. Skibinski, R. Wenne. 2003. Evidence for recombination of mtDNA in the marine mussel Mytilus trossulus from the Baltic. Molecular Biology and Evolution 20: 388-392.
  • Burzyƒski, A., M. Zbawicka, D.O.F. Skibinski, R. Wenne. 2006. Doubly uniparental inheritance is associated with high polymorphism for rearranged and recombinant control region haplotypes in Baltic Mytilus trossulus. Genetics 174: 1081-1094.
  • Cao, L., E. Kenchington, E. Zouros, C. Rodakis. 2004. Evidence that the large noncoding sequence is the main control region of maternally and paternally transmitted mitochondrial genomes of the marine mussel (Mytilus spp.). Genetics 167: 835-850.
  • Campbell, N.J.H., S.C. Barker. 1999. The novel mitochondrial gene arrangement of the cattle tick, Boophilus microplus: fivefold tandem repetition of a coding region. Molecular Biology and Evolution 16: 732-740.
  • Cavalier-Smith, T. 1987. Eukaryotes with no mitochondria. Nature 326: 332-333.
  • Chinnery, P.F., D.C. Samuels, J. Elson, D.M. Turnbull. 2002. Accumulation of mitochondrial DNA mutations in aging, cancer and mitochondrial disease: is there a common mechanism? Lancet 360: 1323-1325.
  • Curole, J.P., T.D. Kocher. 2005. Evolution of a unique mitotypespecific protein-coding extension of the cytochrome c oxidase II gene in freshwater mussels (Bivalvia: Unionoida). Journal of Molecular Evolution 61: 381-389.
  • Filipowicz, M., A. Burzyński, B. Śmietanka, R. Wenne. 2008. Recombination in mitochondrial DNA of European mussels Mytilus. Journal of Molecular Evolution 67 : 377-388.
  • Fisher, C., D.O.F. Skibinski. 1990. Sex-biased mitochondrial DNA heteroplasmy in the marine mussel Mytilus. Proceedings of the Royal Society of London Series B 242: 149-156.
  • Gach, M.H., W.M. Brown. 1997. Characteristics and distribution of large tandem duplications in brook stickleback (Culaea inconstans) mitochondrial DNA. Genetics 145: 383-394.
  • Gantenbein, B., V. Fet, I.A. Gantenbein-Ritter, F. Balloux. 2004. Evidence for recombination in scorpion mitochondrial DNA (Scorpiones: Buthidae). Proceedings of the Royal Society of London Series B 272: 697-704.
  • Gray, M.W., G. Burger, B.F. Lang. 1999. Mitochondrial evolution. Science 283: 1476-1481.
  • Gyllensten, U., D. Wharton, A. Josefsson, A.C. Wilson. 1991. Paternal inheritance of mitochondrial DNA in mice. Nature 352: 255-257.
  • Hoeh, R.W., D.T. Stewart, B.W. Sutherland, E. Zouros. 1996. Multiple origins of gender-associated mitochondrial DNA lineages in bivalves (Mollusca: Bivalvia). Evolution 50: 2276-2286.
  • Hoeh, R., D.T. Stewart, C. Saavedra, B.W. Sutherland, E. Zouros. 1997. Phylogenetic evidence for role-reversals of genderassociated mitochondrial DNA in Mytilus (Bivalvia: Mytilidae). Molecular Biology and Evolution 14: 959-967.
  • Hoeh, R., D.T. Stewart, S.I. Guttman. 2002. High fidelity of mitochondrial genome transmission under the doubly uniparental mode of inheritance in freshwater mussels (Bivalvia: Unionoidea). Evolution 56: 2252-2261.
  • Hoffmann, R.J., J.L. Boore, W.M. Brown. 1992. A novel mitochondrial genome organisation for the blue mussel, Mytilus edulis. Genetics 131: 397-412.
  • Hoarau, G., S. Holla, R. Lescasse, W.T. Stam, J.L. Olsen. 2002. Heteroplasmy and evidence for recombination in the mitochondrial control region of the flatfish Platichthys flesus. Molecular Biology and Evolution 12: 2261-2264.
  • Kaneda, H., J. Hayashi, S. Takahama, C. Taya, K.F. Lindahl, H. Yonekawa. 1995. Elimination of paternal mitochondrial DNA in intraspecific crosses during early mouse embryogenesis. Proceedings of the National Academy of Sciences of the United States of America 92: 4542-4546.
  • Kmiec, B., M. Wołoszyńska, H. Janska. 2006. Heteroplasmy as a common state of mitochondrial genetic information in plants and animals. Current Genetics 50: 149-159.
  • Kondo, R., Y. Satta, E.T. Matsuura, H. Ishiwa, N. Takahatat, S.I. Chigusa. 1990. Incomplete maternal transmission of mitochondrial DNA in Drosophila. Genetics 126: 657-663.
  • Kumazawa, Y., H. Ota, M. Nishida, T. Ozawa. 1996. Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA cluster. Molecular Biology and Evolution 13: 1242-1254.
  • Kvist, L., J. Martens, A.A. Nazarenko, M. Orell. 2003. Paternal leakage of mitochondrial DNA in the great tit (Parus major). Molecular Biology and Evolution 20: 243-247.
  • Ladoukakis, E.D., E. Zouros. 2001. Direct evidence for homologous recombination in mussel (Mytilus galloprovincialis) mitochondrial DNA. Molecular Biology and Evolution 18: 1168-1175.
  • Ladoukakis, E.D., C. Saavaedra, A. Magoulas, E. Zouros. 2002. Mitochondrial DNA variation in a species with two mitochondrial genomes: the case of Mytilus galloprovinicialis from the Atlantic, the Mediterranean and the Black Sea. Molecular Ecology 11: 759-769.
  • Lavrov, D.V., J.L. Boore, W.M. Brown. 2002. Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: duplication and nonrandom loss. Molecular Biology and Evolution 19: 163-169.
  • Liu, H., J.B. Mitton, S. Wu. 1996. Paternal mitochondrial DNA differentiation far exceeds maternal mitochondrial DNA and allozyme differentiation in the freshwater mussel, Anodonta grandis grandis. Evolution 50: 952-957.
  • Lunt, D.H., B.C. Hyman. 1997. Animal mitochondrial DNA recombination. Nature 387: 247.
  • Magoulas, A., E. Zouros. 1993. Restriction-site heteroplasmy in anchovy (Engraulis encrasicolus) indicates incidental biparental inheritance of mitochondrial DNA. Molecular Biology and Evolution 10: 319-325.
  • Meusel, M.S., R.F. Moritz. 1993. Transfer of paternal mitochondrial DNA during fertilization of honeybee (Apis mellifera L.) eggs. Current Genetics 24: 539-543.
  • Mizi, A., E. Zouros, N. Moschonas, G.C. Rodakis. 2005. The complete maternal and paternal mitochondrial genomes of the Mediterranean mussel Mytilus galloprovincialis: implications for the doubly uniparental inheritance mode of mtDNA. Molecular Biology and Evolution 22: 952-967.
  • Mjelle, K.A., B.O. Karlsen, T.E. Jørgensen, T.Moum, S.D. Johansen. 2008. Halibut mitochondrial genomes contain extensive heteroplasmic tandem repeat arrays involved in DNA recombintion. BMC Genomics 9: 10.
  • Mueller, R.L., J.L. Boore. 2005. Molecular mechanisms of extensive mitochondrial gene rearrangement in plethodontid salamanders. Molecular Biology and Evolution 22: 2104-2112.
  • Ort, B.S., G.H. Pogson. 2007. Molecular population genetics of the male and female mitochondrial DNA molecules of the California sea mussel, Mytilus californianus. Genetics 177: 1087-1099.
  • Passamonti, M. 2007. An unusual case of gender-associated mitochondrial DNA heteroplasmy: the mytilid Musculista senhousia (Mollusca, Bivalvia). BMC Evolutionary Biology 16: 7, Suppl. 2-S7.
  • Passamonti, M., V. Scali. 2001. Gender-associated mtDNA heteroplasmy in the venerid clam Tapes philippinarum (Mollusca, Bivalvia). Current Genetics 39: 117-124.
  • Piganeau, G., M. Gardner, A. Eyre-Walker. 2004. A broad survey of recombination in animal mitochondria. Molecular Biology and Evolution 21: 2319-2325.
  • Rawson, P.D. 2005. Nonhomologous recombination between the large unassigned region of the male and female mitochondrial genomes in the mussel, Mytilus trossulus. Journal of Molecular Evolution 61: 717-732.
  • Rawson, P.D., C.L. Secor, T.J. Hilbish. 1996. The effects of natural hybridization on the regulation of doubly uniparental mtDNA inheritance in blue mussels (Mytilus spp.). Genetics 144: 241-248.
  • Rokas, A., E. Ladoukakis, E. Zouros. 2003. Animal mitochondrial DNA recombination revisited. Trends in Ecology and Evolution 18: 411-417.
  • Santel, A., M.T. Fuller. 2001. Control of mitochondrial morphology by a human mitofusin. Journal of Cell Science 114: 867-874.
  • Schierup, M., J. Hein. 2000. Consequences of recombination on traditional phylogenetic analysis. Genetics 156: 879-891.
  • Schwartz, M., J. Vissing. 2002. Paternal inheritance of mitochondrial DNA. The New England Journal of Medicine 347: 576-580.
  • Shao, R., S.C. Barker, H. Mitani, Y. Aoki, M. Fukunaga. 2004. Evolution of duplicate control regions in the mitochondrial genomes of metazoa: a case study with Australasian Ixodes ticks. Molecular Biology and Evolution 22: 620-629.
  • Shoffner, J.M., D.C. Wallace. 1992. Mitochondrial genetics: principles and practice. The American Journal of Human Genetics 51: 1179-1186.
  • Skibinski, D.O.F., C. Gallagher, C.M. Beynon. 1994. Sex-limited mitochondrial DNA transmission in the marine mussel Mytilus edulis. Genetics 138: 801-809.
  • Sutherland, B., D. Stewart, E.R. Kenchington, E. Zouros. 1998. The fate of paternal mitochondrial DNA in developing female mussels, Mytilus edulis: Implication for the mechanism of doubly uniparental inheritance of mitochondrial DNA. Genetics 148: 341-347.
  • Szibor, M., J. Holtz. 2003. Mitochondrial ageing. Basic Research in Cardiology 98: 210-218.
  • Śmietanka, B., M. Zbawicka, M. Wołowicz, R. Wenne. 2004. Mitochondrial DNA lineages in the European populations of mussels Mytilus. Marine Biology 146: 79-92.
  • Theologidis, I., S. Fodelianakis, M.B. Gaspar, E. Zouros. 2008. Doubly Uniparental Inheritance (DUI) of mitochondrial DNA in Donax trunculus (Bivalvia: Donacidae) and the problem of its sporadic detection in Bivalvia. Evolution 62-4: 959-970.
  • Thyagarajan, B.R., A. Padua, C. Campbell. 1996. Mammalian mitochondria possess homologous DNA recombination activity. Journal of Biological Chemistry 271: 27536-27543.
  • Tsaousis, A.D., D.P. Martin, E.D. Ladoukakis, D. Posada, E. Zouros. 2005. Widespread recombination in published animal mtDNA sequences. Molecular Biology and Evolution 22: 925-933.
  • Ujvari, B., M. Dowton, T. Madsen. 2007. Mitochondrial DNA recombination in a freeranging Australian lizard. Biology Letters 3: 189-192.
  • Wallace, D.C. 1994. William Allan Award Address. Mitochondrial DNA variation in human evolution, degenerative disease, and aging. The American Journal of Human Genetics 57: 201-223.
  • Wiuf, C., T. Christensen, J. Hein. 2001. A simulation study of the reliability of recombination detection methods. Molecular Biology and Evolution 18: 1929-1939.
  • Venetis, C., I. Theologidis, E. Zouros, G.C. Rodakis. 2006. No evidence for presence of maternal mitochondrial DNA in the sperm of Mytilus galloprovincialis males. Proceedings of the Royal Society B 273: 2483-2489.
  • Venetis, C., I. Theologidis, E. Zouros, G.C. Rodakis. 2007. A mitochondrial genome with a reversed transmission route in the Mediterranean mussel Mytilus galloprovincialis. Gene 406: 79-90.
  • Yaffe, M.P. 1999. The machinery of mitochondrial inheritance and behavior. Science 283: 1493-1497.
  • Zbawicka, M., R. Wenne, D.O.F. Skibinski. 2003. Mitochondrial DNA variation in populations of the mussel Mytilus trossulus from the Southern Baltic. Hydrobiologia 499: 1-12.
  • Zeviani, M., C. Antozzi. 1997. Mitochondrial disorders. Molecular Human Reproduction 3: 133-148.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-article-BAR0-0062-0067
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