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Unsupervised dynamic topic model for extracting adverse drug reaction from health forums

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Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
The relationship between drug and its side effects has been outlined in two websites: Sider and WebMD. The aim of this study was to find the association between drug and its side effects. We compared the reports of typical users of a web site called: “Ask a patient” website with reported drug side effects in reference sites such as Sider and WebMD. In addition, the typical users’ comments on highly-commented drugs (Neurotic drugs, Anti-Pregnancy drugs and Gastrointestinal drugs) were analyzed, using deep learning method. To this end, typical users’ comments on drugs' side effects, during last decades, were collected from the website “Ask a patient”. Then, the data on drugs were classified based on deep learning model (HAN) and the drugs’ side effect. And the main topics of side effects for each group of drugs were identified and reported, through Sider and WebMD websites. Our model demonstrates its ability to accurately describe and label side effects in a temporal text corpus by a deep learning classifier which is shown to be an effective method to precisely discover the association between drugs and their side effects. Moreover, this model has the capability to immediately locate information in reference sites to recognize the side effect of new drugs, applicable for drug companies. This study suggests that the sensitivity of internet users and the diverse scientific findings are for the benefit of distinct detection of adverse effects of drugs, and deep learning would facilitate it.
Rocznik
Strony
41--59
Opis fizyczny
Bibliogr. 19 poz., fig., tab.
Twórcy
  • Islamic Azad University, Science and Research Branch, Department of Computer Engineering, Islamic Azad University, Tehran, Iran
  • P/S/L Group, 1801 McGill College Ave, Montreal, Quebec H3A 2N4, Montreal, Canada
autor
  • University of Kashan, Department of Computer and Electrical Engineering, Isfahan Province, Qotb-e Ravandi Blvd, Kashan, Iran
  • Islamic Azad University of Qazvin,Department of Computer Engineering, Qazvin, Iran
  • Islamic Azad University of Jasb, Department of Computer Engineering, Markazi, Iran
Bibliografia
  • [1] Akhtyamova, L., Alexandrov, M., & Cardiff, J. (2017a). Adverse drug extraction in twitter data using convolutional neural network. In, 2017 28th International Workshop on Database and Expert Systems Applications (DEXA) (pp. 88–92). Lyon.
  • [2] Akhtyamova, L., Ignatov, A., & Cardiff, J. (2017b). A Large-scale CNN ensemble for medication safety analysis. In F. Frasincar, A. Ittoo, L. Nguyen & E. Métais (Eds.) Natural Language Processing and Information Systems. NLDB 2017. Lecture Notes in Computer Science (vol. 10260, pp. 247–253). Springer, Cham.
  • [3] Bordet, R., Gautier, S., Louet, H. L., Dupuis, B., & Caron, J. (2001). Analysis of the direct cost of adverse drug reactions in hospitalised patients. European journal of clinical pharmacology, 56(12), 935–941.
  • [4] Classen, D. C., Pestotnik, S. L., Evans, R. S., Lloyd, J.F., & Burke, J. P. (1997). Adverse drug events in hospitalized patients: excess length of stay, extra costs, and attributable mortality. Jama, 277(4), 301–306.
  • [5] Ginn, R., Pimpalkhute, P., Nikfarjam, A., Patki, A., O’Connor, K., Sarker, A., Smith, K., & Gonzalez, G. (2014). Mining Twitter for adverse drug reaction mentions, a corpus and classification benchmark. In Proceedings of the fourth workshop on building and evaluating resources for health and biomedical text processing (pp. 1–8).
  • [6] Gupta, S., Pawar, S., Ramrakhiyani, N., Palshikar, G. K., & Varma, V. (2018). Semi-supervised recurrent neural network for adverse drug reaction mention extraction. BMC bioinfor-matics, 19(8), 212.
  • [7] Harpaz, R., Callahan, A., Tamang, S., Low, Y., Odgers, D., Finlayson, S., Jung, K., LePendu, P., & Shah, N. H. (2014). Text mining for adverse drug events, the promise, challenges, and state of the art. Drug safety, 37(10), 777–790.
  • [8] Ho, T. B., Le, L., Thai, D. T., & Taewijit, S. (2016). Data-driven approach to detect and predict adverse drug reactions. Current pharmaceutical design, 22(23), 3498–3526.
  • [9] Joulin, A., Grave, E., Bojanowski, P., & Mikolov, T. (2016). Bag of tricks for efficient text clas-sification. In Proceedings of the 15th Conference of the European Chapter of the Association for Computational Linguistics: Volume 2, Short Papers (pp. 427–431). Association for Computational Linguistics.
  • [10] Kongkaew, C., Noyce, P. R., & Ashcroft, D.M. (2008). Hospital admissions associated with adverse drug reactions: a systematic review of prospective observational studies. Annals of Pharmacotherapy, 42(7–8), 1017–1025.
  • [11] Lee, K., Qadir, A., Hasan, S. A., Datla, V., Prakash, A., Liu, J., & Farri, O. (2017). Adverse drug event detection in tweets with semi-supervised convolutional neural networks. In Proceedings of the 26th International Conference on World Wide Web (pp. 705–714). Republic and Canton of Geneva, CHE: International World Wide Web Conferences Steering Committee. doi:10.1145/3038912.3052671.
  • [12] Miranda, D. S. (2018). Automated detection of adverse drug reactions in the biomedical literature using convolutional neural networks and biomedical word embeddings. SwissText.
  • [13] Rezaei, Z., Ebrahimpour-Komleh, H., Eslami, B., Chavoshinejad, R., & Totonchi, M. (2020). Adverse Drug Reaction Detection in Social Media by Deepm Learning Methods. Cell journal, 22(3), 319–324.
  • [14] Rison, R. A. (2013). A guide to writing case reports. Journal of Medical Case Reports and BioMed Central Research Notes, 7, 239. doi:10.1186/1752-1947-7-239
  • [15] Sarker, A., & Gonzalez, G. (2015). Portable automatic text classification for adverse drug reaction detection via multi-corpus training. Journal of biomedical informatics, 53, 196–207.
  • [16] Sultana, J., Cutroneo, P., & Trifirò, G. (2013). Clinical and economic burden of adverse drug reactions. Journal of pharmacology, 4(Suppl1), 73.
  • [17] Tan, Y., Hu, Y., Liu, X., Yin, Z., wen Chen, X., & Liu, M. (2016). Improving drug safety, From adverse drug reaction knowledge discovery to clinical implementation. Methods, 110, 14–25.
  • [18] Vallano, A., Cereza, G., Pedròs, C., Agustí, A., Danés, I., Aguilera, C., & Arnau, J. M. (2005). Obstacles and solutions for spontaneous reporting of adverse drug reactions in the hospital. British journal of clinical pharmacology, 60(6), 653–658.
  • [19] Yang, Z., Yang, D., Dyer, C., He, X., Smola, A., & Hovy, E. (2016). Hierarchical attention networks for document classification. In Proceedings of the 2016 Conference of the North American Chapter of the Association for Computational Linguistics, Human Language Technologies (pp. 1480–1489). Association for Computational Linguistics.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-63a7b59b-08e7-463a-823f-34ab1f8d5a05
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