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Abstrakty
The designing, production and testing of the mDLL machine led to the development of such a structure in which operational cells (e.g. KDLL) were located in the nodes of a three-dimensional torus network and the device was scalable. Thus, the future expansion of this device with additional Printed Circuit Boards (PCB) will not result in lengthened wire connections between Field-Programmable Gate Arrays (FPGA) or slow down the operation of the machine. The conducted tests confirmed the correctness of the adopted design assumptions and showed that by using mDLL one can effectively perform molecular simulations. Despite some structural shortcomings, the mDLL machine was a prototype that has already been sufficiently tested to allow the technology used in it to be used to build a device with a number of 1 million to 5 million KDLL cells. Such a device would already be suitable for simulating multi-particle systems with unprecedented speed.
Rocznik
Tom
Strony
235--247
Opis fizyczny
Bibliogr. 18 poz., rys.
Twórcy
autor
- Department of Molecular Physics, Technical University of Łódź 90-924 Łódź, Poland
autor
- Department of Electronics, Technical University of Łódź 90-924 Łódź, Poland
autor
- Department of Electronics, Technical University of Łódź 90-924 Łódź, Poland
autor
- Department of Molecular Physics, Technical University of Łódź 90-924 Łódź, Poland
autor
- Department of Molecular Physics, Technical University of Łódź 90-924 Łódź, Poland
autor
- Department of Chemistry, University of Warsaw Pasteura 1 02-093 Warsaw, Poland
Bibliografia
- [1] B.G. Fitch, A. Rayshubsky, M. Elftheriou, T.J.C. Ward, M.E. Giampapa, M.C. Pitman, J.W. Pitera, W.C. Swope, R.. Germain, Blue Matter: Scalling of N-body simulations to one atom per node, IBM J. Res & Dev, 52 145 (2008).
- [2] X. Hu, L. Hong, M.D. Smith, T. Neusius, X. Cheng, J.C. Smith J., The Dynamics of Single Protein Molecules Is NonEquilibrium and Self-Similar over Thirteen Decades in Time,Nature Physics 12, 171–174 (2016).
- [3] W. Chen, E. De Schutter, Parallel STEPS: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers, Frontiers in Neuroinformatics, 11:13, doi: 10.3389/fninf.2017.00013 (2017)
- [4] P. Polanowski, Implementacja sieciowych modeli cieczy i polimerów w symulacjach opartych na obliczeniach równoległych, Rozprawa doktorska, Politechnika Łódzka, (2002).
- [5] R.D. Jackson, A.J. Hoane Jr., Modular Infinitely Extendable Three Dimensional Torus Packing Scheme for Parallel Processing, US Patent no. US005715391A, http://www.google.ch/patents/US5715391 (1998).
- [6] T. Pakula, Collective dynamics in simple supercooled and polymer liquids, J. Mol. Liq. 86, 109-121 (2000).
- [7] P. Polanowski, J.K. Jeszka, K. Krysiak, K. Matyjaszewski,Influence of intramolecular crosslinking on gelation in living copolymerization of monomer and divinyl cross-linker.Monte Carlo simulation studies, Polymer, 79, 171-178 (2015).
- [8] P. Polanowski, J. Jung, R. Kiełbik, A. Napieralski, K. Lichy, Od algorytmu dynamicznej cieczy sieciowej do dedykowanego komputera równoległego, Przegl ˛ad Elektrotechniczny, 84, 69-73 (2008).
- [9] J. Jung, Od wybranych zagadnie´n elektroniki organicznej do uniwersalnej maszyny przeznaczonej do analizy zjawisk zachodz ˛acych w g˛estych układach wieloskładnikowych, Rozprawa habilitacyjna, Politechnika Łódzka (2016).
- [10] J. Jung, P. Polanowski, R. Kiełbik, Special state machine based on Dynamic Lattice Liquid model, International Journal of Engineering Science and Innovative Technology (IJESIT), 3, 360-367 (2014).
- [11] J. Jung, P. Polanowski, R. Kiełbik, K. Hałagan, W. Zatorski, J. Ulanski, A. Napieralski, T. Pakuła, ´ A parallel machine with reduced number of connections between logical circuits, (2016), EP Patent Application no. EP3079073A1, https://www.google.com/patents/EP3079073A1?cl=un(2016).
- [12] G.G. Pachanek, N.P. Pitsianis, E.F. Barry, T.L. Drabenstott, Method and Apparatus for Manifold Array Processing, US Patent no. US6167502A, https://www.google.tl/patents/US6167502 (2000).
- [13] H.W. Daniel, Parallel Processor, EP Patent no. EP0501524A2.
- [14] www.google.com.na/patents/EP0501524A2?cl=un (1992).
- [15] R.S. Passint, G. Thorson, M.B. Galles, Hybrid Hypercube/Torus Architecture, US Patent no. US6230252B1, http://www.google.ch/patents/US6230252 (2001).
- [16] J. Jung, P. Polanowski, R. Kiełbik, K. Hałagan, W. Zatorski, J. Ulanski, A. Napieralski, T. Pakuła, ´ Panel z układami elektronicznymi i zestaw paneli, RP Patent no. P.405479,http://regserv.uprp.pl/register/application?number=P.405479 (2016).
- [17] J. Jung, P. Polanowski, R. Kiełbik, K. Hałagan, W. Zatorski, J. Ulanski, A. Napieralski, T. Pakuła, ´ A panel with electronic circuits and a set of panels, EP PatentApplication no. EP3079071A1, https://google.com/patents/EP3079071A1?cl=en (2016).
- [18] J. Jung, P. Polanowski, R. Kiełbik, K. Hałagan, W. Zatorski, J. Ulanski, A. Napieralski, T. Pakuła, ´ A paralel machine having operational cells located at nodes of a face centered lattice, EP Patent Application no. EP3079072A1,https://www.google.com.na/patents/EP3079072A1?cl=en (2016).
Uwagi
Opracowanie rekordu w ramach umowy 509/P-DUN/2018 ze środków MNiSW przeznaczonych na działalność upowszechniającą naukę (2018).
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-5bc49241-4044-4cc2-b3e0-406dda647205