Visualization and Interaction in the atlas of the human brain, head and neck

• Autorzy: Nowinski W. L.

Identyfikatory

DOI

10.22630/MGV.2014.23.3.1

• Języki publikacji: EN

Abstrakty

EN

Our ultimate objective is to create a holistic and reference atlas of the whole adult human brain along with the head and neck. Several techniques have been employed to create atlases. Here we discuss the atlas design and use from a point of view of two key techniques, visualization and interaction. For visualization, surface rendering of a geometrical model of the brain, head and neck is employed. Geometrical model ensures anatomic parcellability, high (sub-pixel) resolution, editibility, extendibility, structure separability, structure-to-structure conflict detection, and integration a knowledge-based content with the atlas. Interaction allows the user to create and explore any region of interest along with its surroundings just with a few clicks, taking into account that the atlas provides a rich set of functions and the number of atlas components is about 3,000. There are seven types of interaction enabling to: select and deselect tissue classes/groups/individual structures, do real-time manipulation, do virtual dissections, select and scroll the original scans, query a structure to get its label or location, get stereotactic coordinates and measure distances, and support other functionality. This design of visualization and interaction provides a fast and easy to use solution, and allows the atlas to run on desktop and mobile iPad and Android-based platforms.

Słowa kluczowe

EN

atlas; brain; head; neck; visualization; interaction; geometrical model; integration; knowledge base; desktop platform; mobile platform

• Wydawca: Institute of Information Technology of the Warsaw University of Life Sciences – SGGW
• Czasopismo: Machine Graphics and Vision
• Rocznik: 2014
• Tom: Vol. 23, No. 3/4
• Strony: 3--10
• Opis fizyczny: Bibliogr. 14 poz., il.

Twórcy

autor

Nowinski W. L.

• Department of Radiology, University of Washington, Seattle, US

Bibliografia

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• [3] Kockro R.A., Serra L., Yeo T.T., Chan C., Sitoh Y.Y., Chua G.G., Ng H., Lee E., Lee Y.H., Nowinski W.L.: Planning and simulation of neurosurgery in a virtual reality environment. Neurosurgery, 46(1):118-137, 2000.
• [4] Teistler M., Breiman R. S., Sauw M. L., Lianf Yoong Ho, Atif Shahab, Nowinski W.L.: Interactive definition of transfer functions in volume rendering based on image markers. International Journal of Computer Assisted Radiology and Surgery, 2(1):55-64, 2007.
• [5] Nowinski W.L., Chua B.C., Puspitasari F., Volkau I., Marchenko Y., Knopp M.V.: Three-dimensional reference and stereotactic atlas of human cerebrovasculature from 7 Tesla. Neuroimage, 55(3):986-98, 2011.
• [6] Nowinski W.L., Chua B.C., Qian G.Y., Nowinska N.G.: The human brain in 1700 pieces: design and development 142 of a three-dimensional, interactive and reference atlas. Journal of Neuroscience Methods, 15;204(1):44-60, 2012.
• [7] Nowinski W.L., Chua B.C., Yang G.L., Qian G.Y.: Three-dimensional interactive human brain atlas of white matter tracts. Neuroinformatics, 10(1):33-55, 2012.
• [8] Nowinski W.L., Johnson A., Chua B.C., Nowinska N.G.: Three-dimensional interactive and stereo-tactic atlas of cranial nerves and nuclei correlated with surface neuroanatomy, vasculature and magnetic resonance imaging. Journal of Neuroscience Methods, 206(2):205-216, 2012.
• [9] Nowinski W.L., Chua B.C., Johnson A., Qian G., Poh L.E., Wut Yi S.H., Aminah B., Nowinska N.G.: Three-dimensional interactive and stereotactic atlas of head muscles and glands correlated with cranial nerves and surface and sectional neuroanatomy. Journal of Neuroscience Methods, 215(1):12-18, 2013.
• [10] Nowinski W.L., Chua B.C.: The Complete Human Brain (version 1.0 for iPad). Thieme, New York, AppStore, 2013.
• [11] Nowinski W.L., Chua B.C., Ngai V.: The 3D Brain Atlas (version 1.0 for Android tablet). Thieme, New York, 2014.
• [12] Nowinski W.L., Thaung T.S.L., Chua B.C., Wut Yi S.H., Yang Y., Urbanik A.: Three-dimensional stereotactic atlas of the extracranial vasculature correlated with the intracranial vasculature, cranial nerves, skull and muscles. The Neuroradiology Journal (in press), 2015.
• [13] Nowinski W.L., Chua B.C., Thaung T.S.L., Wut Yi S.H.: The Human Brain, Head and Neck in 2953 Pieces. Thieme, New York, 2015.
• [14] Nowinski W.L.: Brain atlasing: design principles, methods, tools and applications. In: Mityushev V, Ruzhansky M (eds) Analytic Methods in Interdisciplinary Applications, Springer Proceedings in Mathematics & Statistics 116, Springer, Cham, 97-107, 2015. doi:10.1007/978-3-319-12148