Use of genetic algorithms to solving basic problems of biomolecular dynamics

• Autorzy: Starosta R. , Walczak T.
• Konferencja: Symposium “Vibrations In Physical Systems” (22 ; 19-22.04.2006 ; Będlewo koło Poznania, Polska)
• Języki publikacji: EN

Słowa kluczowe

EN

molecular dynamics; protein particles; bonded atoms; long-distance interactions; genetic algorithms

PL

dynamika molekularna; cząsteczka białka; wiązanie kowalencyjne; oddziaływania dalekobieżne; algorytmy genetyczne

• Wydawca: Poznan University of Technology. Institute of Applied Mechanics
• Czasopismo: Vibrations in Physical Systems
• Rocznik: 2006
• Tom: Vol. 22
• Strony: 327--330
• Opis fizyczny: Bibliogr. 9 poz.

Twórcy

autor

Starosta R.

• Institute of Applied Mechanics, Poznan University of Technology

autor

Walczak T.

• Institute of Applied Mechanics, Poznan University of Technology

Bibliografia

• 1. David E. Goldberg, Algorytmy genetyczne i ich zastosowania, Warszawa, WNT, (2003).
• 2. Zbigniew Michalewicz, Algorytmy genetyczne + struktury danych = programy ewolucyjne, Warszawa, WNT, (2003).
• 3. M.Marquart,J.Walter,J.Deisenhofer,W.Bode,R.Huber, The Geometry of the Reactive Site and of The Peptide Groups in Trypsin, Trypsinogen and its Complexes with Inhibitors, Acta Crystallogr., Sect.B v. 39 480, (1983).
• 4. Raimundo Gargallo, Philippe H. Hunenberger, Francesc X. Aviles, Baldomero Oliva, Molecular dynamics simulation of highly charged proteins: comparison of the particle-particle particle-mesh and reaction field methods for the calculation of electrostatic interactions, Protein Science (2003).
• 5. Michael P. Allen, Introduction to Molecular Dynamics Simulation, Computational Soft Matter: From Synthetic Polymers to Proteins, Lecture Notes, v. 23, 1-28, (2004).
• 6. Jarosław Pillardy, Cezary Czaplewski, Adam Liwo, Jooyoung Lee, Daniel R. Ripoll, Rajmund Kaz´mierkiewicz, Stanisław Ołdziej, William J. Wedemeyer, Kenneth D. Gibson, Yelena A. Arnautova, Jeff Saunders, Yuan-Jie Ye and Harold A. Scheraga, Recent improvements in prediction of protein structure by global optimization of a potential energy function, PNAS, 98 (2001).
• 7. David E. Clark, Raimund Mannhold, Hugo Kubinyi, Hendrik Timmerman, Evolutionary Algorithms in Molecular Design, Wiley-VCH, v. 8, (2000).
• 8. Hans-Dieter Höltje, Wolfgang Sippl, Didier Rognan, Gerd Folkers, Molecular Modeling: Basic Principles and Applications, Wiley-VCH, (2003).
• 9. Protein Data Bank, An Information Portal to Biological Macromolecular Structures, http://pdbbeta.rcsb.org.